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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009124252.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SAP | ||||||||
Protein Properties | Length: 457aa MW: 50478.9 Da PI: 7.1551 | ||||||||
Description | SAP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SAP | 714.6 | 1e-217 | 1 | 456 | 1 | 454 |
SAP 1 mssssssssseseegseggeggdassgesegpsssrqr.aanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwq 94 msssss+s++ +++g ++ + ++s+g +e+ps sr+r +an+vwpePfle+la+qva+das s+ + aa+ala vf+vc+ w+avsrsd+lwq XP_009124252.1 1 MSSSSSASDNGNSSGGLSSVA-GRSGGVFEAPSPSRPRhSANDVWPEPFLESLAVQVAVDASFSTSPVDAAPALASVFRVCTMWQAVSRSDHLWQ 94 899999888888877655554.67789**********9899****************************************************** PP SAP 95 rltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpq 189 l+r++W+rt+l++dtWr+e+iyrhrtarnf+tr y +vtl+fdp+dvde +d+lsCrcl lsd ylaaGfadG+vrlf l++rlhv+t++p XP_009124252.1 95 LLSRQVWARTRLMHDTWRDEFIYRHRTARNFQTRSYVHVTLNFDPSDVDE---PDSLSCRCLRLSDLYLAAGFADGTVRLFLLNSRLHVRTLRPP 186 **********************************************9998...689*************************************** PP SAP 190 hrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGG 284 rdr+GrfsravsGivisdsrlvfat+dGdihva+i+g+g +++r+a++Gd+vndGalvdf+G+gr+wvGl+aGvpGrafhiWd+ ee++fvGG XP_009124252.1 187 PRDRFGRFSRAVSGIVISDSRLVFATMDGDIHVAEINGVG-SHTRTAFVGDIVNDGALVDFTGCGRYWVGLFAGVPGRAFHIWDCINEETTFVGG 280 **************************************88.89**************************************************** PP SAP 285 sltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasneayvvvdsrGvatvrrvenleevc 378 sltdPeavmGWh+ltelt ++Gr+r+++ etava t +r++v+dlrnqgv+++e+ee+ rGliv+++da+++ayv++dsrG+a+vrrv + e+vc XP_009124252.1 281 SLTDPEAVMGWHTLTELTMSLGRLRISGGETAVAWTGWRIMVIDLRNQGVIIGEDEEQrRGLIVTGFDANDQAYVRMDSRGNAIVRRVRTQETVC 375 ****************************************************99888779*********************************** PP SAP 379 rfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsss....dgtihlldfga 454 +frv++ aqr+v+gCvn+ +al++aggv+rvW++++ ++ylys+rervgev+a+va+drhvav+ss +tihl+dfga XP_009124252.1 376 EFRVSRaAQRRVMGCVNRLHALMCAGGVMRVWDVQRGGEYLYSFRERVGEVDAIVANDRHVAVASSsstaVSTIHLWDFGA 456 ****999********************************************************9984444468*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81383 | 3.92E-6 | 72 | 123 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 2.6E-4 | 72 | 129 | No hit | No description |
Gene3D | G3DSA:2.130.10.10 | 1.3E-9 | 149 | 223 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF50978 | 3.4E-11 | 150 | 222 | IPR017986 | WD40-repeat-containing domain |
SuperFamily | SSF50978 | 3.4E-11 | 283 | 453 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 1.3E-9 | 360 | 454 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0030163 | Biological Process | protein catabolic process | ||||
GO:0046622 | Biological Process | positive regulation of organ growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MSSSSSASDN GNSSGGLSSV AGRSGGVFEA PSPSRPRHSA NDVWPEPFLE SLAVQVAVDA 60 SFSTSPVDAA PALASVFRVC TMWQAVSRSD HLWQLLSRQV WARTRLMHDT WRDEFIYRHR 120 TARNFQTRSY VHVTLNFDPS DVDEPDSLSC RCLRLSDLYL AAGFADGTVR LFLLNSRLHV 180 RTLRPPPRDR FGRFSRAVSG IVISDSRLVF ATMDGDIHVA EINGVGSHTR TAFVGDIVND 240 GALVDFTGCG RYWVGLFAGV PGRAFHIWDC INEETTFVGG SLTDPEAVMG WHTLTELTMS 300 LGRLRISGGE TAVAWTGWRI MVIDLRNQGV IIGEDEEQRR GLIVTGFDAN DQAYVRMDSR 360 GNAIVRRVRT QETVCEFRVS RAAQRRVMGC VNRLHALMCA GGVMRVWDVQ RGGEYLYSFR 420 ERVGEVDAIV ANDRHVAVAS SSSTAVSTIH LWDFGAL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in inflorescence and floral meristems, young floral organ primordia, and later in ovule primordia. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009124252.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009124252.1 | 0.0 | PREDICTED: transcriptional regulator STERILE APETALA | ||||
Swissprot | Q9FKH1 | 0.0 | SAP_ARATH; Transcriptional regulator STERILE APETALA | ||||
TrEMBL | A0A397ZJ07 | 0.0 | A0A397ZJ07_BRACM; Uncharacterized protein | ||||
STRING | Bra035375.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11018 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35770.1 | 0.0 | SAP family protein |
Publications ? help Back to Top | |||
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