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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009124240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CO-like | ||||||||
Protein Properties | Length: 366aa MW: 40450.6 Da PI: 6.1236 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.7 | 4.1e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C ++H+ H++ XP_009124240.1 4 MCDFCGEQRSMVYCRSDAACLCLSCDRSIHSAnalskrHSR 44 6*****************************65677777765 PP | |||||||
2 | zf-B_box | 21.7 | 4.2e-07 | 46 | 93 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..........Htvvp 41 +C++++ ++++ C + ++ lC++C ++H++ H++++ XP_009124240.1 46 LVCERCNAHPATVRCVEERVSLCQNCDWSGHNNnnnsnslsshHKRQS 93 68*****************************88889999999888766 PP | |||||||
3 | CCT | 60.8 | 4.5e-21 | 309 | 352 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrF k+ XP_009124240.1 309 RNNAVMRYKEKKKARKFDKTVRYASRKARADVRRRVKGRFIKAG 352 99**************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.712 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.96E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 5.9E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.958 | 43 | 94 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00146 | 47 | 73 | No hit | No description |
SMART | SM00336 | 0.79 | 48 | 94 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.0E-16 | 309 | 351 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.08 | 309 | 351 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SIHSANALSK RHSRTLVCER CNAHPATVRC 60 VEERVSLCQN CDWSGHNNNN NSNSLSSHHK RQSISCYSGC PSSSELASIW SFCSDLAGQS 120 VCEQEIGMMN IDDDGQTNQN CNEDKKDVIV GSSSRLETSY AAHANSPFAK DIGVCEDDFY 180 DNLGMDEVDL ALENYEELFG TAFNSSGHLF GQCGIDSLFQ KHQAAPEGGN SVQPAESNDS 240 FMSSKTEPII CYTSKPAHSN ISFSGVTGES CAGDFQECGA SSSMQLLGDP PWYPQTSQDN 300 NAFSHSVTRN NAVMRYKEKK KARKFDKTVR YASRKARADV RRRVKGRFIK AGEAYDYDPL 360 TPTRSY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.31941 | 0.0 | leaf| silique |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009124240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009124232.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_009124240.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_009124250.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_009124257.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 0.0 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A3P6A0V5 | 0.0 | A0A3P6A0V5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FFZ6 | 0.0 | M4FFZ6_BRARP; Uncharacterized protein | ||||
STRING | Bra040020.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 0.0 | CONSTANS-like 9 |