PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009123732.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 294aa MW: 33269.4 Da PI: 7.9816

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009123732.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.9	2.4e-34	158	215	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+ XP_009123732.1 158 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSLQDPTVVITTYEGQHNHP 215 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	1.9E-98	1	294	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	6.2E-36	142	217	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-30	149	217	IPR003657	WRKY domain
PROSITE profile	PS50811	32.787	152	217	IPR003657	WRKY domain
SMART	SM00774	6.8E-40	157	216	IPR003657	WRKY domain
Pfam	PF03106	1.1E-26	158	215	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MSNETKDLYN YQYPSSFSLY EMMNLPSSAQ SSYGNNGFDH GLHSSPGAYD SLLQKTFGLS 60 PPSSEVFNSS IDHESNRCAT NDVTGETPTR VSTSSSSSEA DHPGEDCGKS QRKRELAEDG 120 REENRSSKTV NKTKKKEEKK EREPRVSFMT KSEVDHLEDG YRWRKYGQKA VKNSPYPRSY 180 YRCTTQKCNV KKRVERSLQD PTVVITTYEG QHNHPIPTNL RGSSAAAAMY SANFMNPRSL 240 THDMFRTAAL DYGYGQSGYG NVNANPSSHQ EYRQGSEYEL LKDIFPSNFF KQEP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-30	148	217	8	77	Probable WRKY transcription factor 4
2lex_A	9e-30	148	217	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009123732.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC246575	0.0	KC246575.1 Brassica napus WRKY transcription factor 28.2 (WRKY28.2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009123732.1	0.0	PREDICTED: probable WRKY transcription factor 28
Swissprot	Q8VWJ2	1e-154	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	M4FIJ7	0.0	M4FIJ7_BRARP; WRKY transcription factor
STRING	Bra040926.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1524	26	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	1e-145	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]