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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009123614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 375aa MW: 41821.4 Da PI: 6.3886 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 41.4 | 3.1e-13 | 4 | 46 | 2 | 46 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 p lrWt++LH++Fv+a+e G e+AtPk++lel+k Ltl hv XP_009123614.1 4 PWLRWTTTLHACFVHAIELFGVLERATPKSVLELVK--YLTLVHV 46 569******************************965..5777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.33E-5 | 3 | 46 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-10 | 4 | 46 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-9 | 6 | 46 | IPR006447 | Myb domain, plants |
Pfam | PF14365 | 4.2E-23 | 62 | 158 | IPR025521 | Domain of unknown function DUF4409 |
Pfam | PF03080 | 3.2E-18 | 172 | 228 | IPR004314 | Domain of unknown function DUF239 |
Pfam | PF03080 | 5.2E-33 | 229 | 348 | IPR004314 | Domain of unknown function DUF239 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MTAPWLRWTT TLHACFVHAI ELFGVLERAT PKSVLELVKY LTLVHVLMSI CVTVAMSTPV 60 LTINSPDGDL IDCMKINDQQ ALQHPLLKHH KIQETPTGHM VQKGENSGWQ VWHRSGACPR 120 GSIPVRRSED TIFQKNETVT PNAAADRATR GHQYAIAYVK GKRKIYGTKA TINVWDPIVE 180 ASGDFSLAQI WVASGSYETN DLNTIEAGWQ VFPSKYGDAQ PRVFTYWTDP ISGNWWLAIG 240 VDTFEPVGYW PAELFTTMSD HATMVEWGGE ILYRNTSGLS TITQMGSGEF PEKGYRKSAY 300 FCNLNVAEEH NSLQPVEDFN LQADHEELYT IMKSNTEACG NHFYFGGPGH GPVRSTAVRA 360 AATFVFLFSA VLLVL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009123614.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009123614.1 | 0.0 | PREDICTED: uncharacterized protein LOC103848466 isoform X2 | ||||
TrEMBL | D7LYM3 | 1e-124 | D7LYM3_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_6001536 | 1e-125 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 3e-15 | G2-like family protein |