PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009123531.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 372aa MW: 40021.1 Da PI: 9.987 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.4 | 8.6e-15 | 295 | 350 | 5 | 60 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+ + ++ ++ ++ + XP_009123531.1 295 RRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENQELQRKQAKIMEMQKNQE 350 79***************************************999888888876655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.8E-13 | 291 | 355 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.174 | 293 | 344 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-12 | 295 | 351 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.9E-14 | 295 | 344 | No hit | No description |
CDD | cd14707 | 1.62E-27 | 295 | 349 | No hit | No description |
SuperFamily | SSF57959 | 8.13E-11 | 295 | 344 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 298 | 313 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0010255 | Biological Process | glucose mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MNFKNNNNMG NEPPGDGGGG ALTRQGSIYS LTFDEFQSSL GKDFGSMNMD ELLKNIWTAE 60 ETQAMAVAAS TSGVIPLAGE GLPLQRQGSL TLPRTLSTKT VDQVWKDLAK DGGGGTNLTQ 120 SQSQRQQTLG EVTLEEFLVR AGVVREEAQI AAKDANTGFS VQASPQVVPG LMGNLGAETV 180 NHMQVQGSSL PLNVNGARST YQQHQPIMPK QPGFGYGTHV GPGIRGGLMG LGDQSLTNNM 240 GLVQGVVGAV SPVTPVSADG IGKNNGDSSS LSPSPYMFNG VRGRKSGTVE KVVERRQRRM 300 IKNRESAARS RARKQAYTVE LEAEVAKLKE ENQELQRKQA KIMEMQKNQE MEMMNIQGGA 360 KKKLRRTESG PW |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00186 | DAP | Transfer from AT1G45249 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009123531.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE616527 | 0.0 | HE616527.1 Brassica napus mRNA for abscisic acid responsive elements-binding factor 2 (abf2 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009123528.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X2 | ||||
Swissprot | Q9M7Q4 | 0.0 | AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
TrEMBL | A0A397XIM4 | 0.0 | A0A397XIM4_BRACM; Uncharacterized protein | ||||
STRING | Bra040260.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G45249.1 | 1e-152 | abscisic acid responsive elements-binding factor 2 |
Publications ? help Back to Top | |||
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