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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009123488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 185aa MW: 21724.4 Da PI: 6.3692 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.8 | 9.3e-09 | 152 | 181 | 1 | 30 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +r +h +Er+RR+++N+ + Lr+llP++ XP_009123488.1 152 QRISHIVVERNRRRQMNEHVNSLRSLLPPS 181 699*************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.58E-8 | 142 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.15E-6 | 150 | 185 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-7 | 150 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.573 | 151 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-6 | 152 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MESFQGHINP CYLDRKADAR SLEVQEFAEA QSFSFKEEED QDTVPFLQML QSEEPSFLRL 60 LSLQNLKEPW EVESFLSQEG YPHLYQNQVS ASYMEGAKQD LSSQEADMIL LPSSSPQHKR 120 KNSDLLAPDM TREKRKRRKT KPSKNIEEIE SQRISHIVVE RNRRRQMNEH VNSLRSLLPP 180 SYIQR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 138 | KRKNSDLLAPDMTREKRKRRK |
2 | 133 | 138 | KRKRRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009123488.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009123488.1 | 1e-134 | PREDICTED: transcription factor bHLH67-like, partial | ||||
Swissprot | Q700E4 | 3e-64 | BH067_ARATH; Transcription factor bHLH67 | ||||
TrEMBL | A0A078JLU3 | 1e-130 | A0A078JLU3_BRANA; BnaA04g27520D protein | ||||
STRING | XP_006402426.1 | 1e-68 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3119 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61950.1 | 3e-66 | bHLH family protein |
Publications ? help Back to Top | |||
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