PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009123214.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 327aa    MW: 36204.3 Da    PI: 4.813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009123214.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-102532931055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_009123214.1 253 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 293
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14244309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12248302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-11252297No hitNo description
PfamPF000104.0E-8253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEAMGEWSTG LGGMYTDEAD FMNQLLASYD QPCGVSSPET TAPAAAYHPQ NAHLTGGFCF  60
SQESSSYSAG HSGYYAVMPP REENNNGMED VTINTNLYLV GEEMCECELA EYSAKSLLPL  120
ETAEENQDDN KRSLETEDDQ KLFNACESSK KRTRAITTDK NKRASKTRKT KKIMEMSDNN  180
NNSGGEVHTE KAGGERHTKA LKIQKTCYSD DEANGGDTSS CKEGGEDCKA LNLNGKTRAS  240
RGAATDPQSL YARKRRERIN ERLKILQNLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS  300
SDDLWMYAPI AYNGMDIGLD MKLNSLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009123214.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123214.10.0PREDICTED: transcription factor bHLH84 isoform X2
SwissprotQ7XHI91e-175BH084_ARATH; Transcription factor bHLH84
TrEMBLM4FFE60.0M4FFE6_BRARP; Uncharacterized protein
STRINGBra039819.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-171bHLH family protein