PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122879.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 384aa    MW: 41321.7 Da    PI: 8.1591
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045173195123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_009122879.1 173 YQCKTCDRTFPSFQALGGHRASH 195
                     9***********99999998887 PP
2zf-C2H2130.0003249271123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_009122879.1 249 HECGICGAEFTSGQALGGHMRRH 271
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-12172197IPR007087Zinc finger, C2H2
SuperFamilySSF576672.46E-6172195No hitNo description
SMARTSM003550.028173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471173200IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576672.46E-6244271No hitNo description
Gene3DG3DSA:3.30.160.607.9E-4247273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-11248273IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951249276IPR007087Zinc finger, C2H2
SMARTSM003550.047249271IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280251271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
METAEEAISA AKAQALIIKG KRTKRQRPQS PIPFSIVPPM SSQEPDTQEE STSLVAKEKS  60
LNDEINYNNN KNDNNILSIG VTSSSSTSSS FNNATLKAAA DEEDQDMANC LILLAQGHSL  120
PHQQPQTRQL MVSYQESGNN NNNAYRSSSR RFLETSSSNG TTTSGGRAGY YVYQCKTCDR  180
TFPSFQALGG HRASHKKPKA APGLHDLKKS IYNDAVSHHL NNVLTTTPNN NNNHRSLVVH  240
GKANNNKVHE CGICGAEFTS GQALGGHMRR HRGAGVAATA TPTATLALPA SAATANTVLS  300
LSPMSFDQLS DGPVYPVQAP VKRARSAVVS LDLDLNLPAP EDENRVNGLS VASKQEHGHE  360
QTQGREEQKS IVLSSAPTLV DCYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122879.10.0PREDICTED: zinc finger protein ZAT5-like
RefseqXP_013646415.10.0zinc finger protein ZAT5-like
TrEMBLA0A398AVP90.0A0A398AVP9_BRACM; Uncharacterized protein
STRINGBo1g143860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-148C2H2 family protein