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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009122861.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 440aa MW: 49813.9 Da PI: 5.8506 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009122861.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 168.9 | 1.7e-52 | 28 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL +++k++++ewyf+s dkky +g r nrat++gyWkatgkd+e+
XP_009122861.1 28 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSRLKTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATGKDREIR 121
579************************999.99**************8544899999************************************** PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ + + g+kktLvf++grap+g +t+Wvmheyrl
XP_009122861.1 122 R-DVQILGMKKTLVFHSGRAPDGLRTNWVMHEYRL 155
9.999****************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 440 aa
Download sequence Send
to blast |
MGRESMAVVE SSPPSATAPG AAVSATSLAP GFRFHPTDEE LVSYYLKRKV LGKPVRFDAI 60 GEVDIYKHEP WDLAVFSRLK TRDQEWYFYS ALDKKYGNGA RMNRATNKGY WKATGKDREI 120 RRDVQILGMK KTLVFHSGRA PDGLRTNWVM HEYRLVDYET ESNGNLVQDA YVLCRIFHKN 180 NIGPPSGNRY APFMEEEWSD DRVALIPGVD VRVRAEPLPL ANGNNHMNQE IQPESKDLIN 240 INEPPRETTT QMDIELNHQE NNNSNRNDEI EEALKREETE EDERLPPPPP PVCILNKEAP 300 LPLLQYKRRR QNESTRTTQD HSSSTITVDN TPTLVSNSTA AAATNTAISA LLEFSLMGIS 360 DKKENSKPLH KEASPPPAPL PSPEEKLNDL KKEVHQMSVE RETFKLEMMS AEAMISILQS 420 RIDALRQEND ELKKNSANGH
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 1e-47 | 6 | 181 | 7 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 6 | 181 | 7 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 6 | 181 | 7 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 6 | 181 | 7 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 6 | 181 | 7 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 6 | 181 | 7 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 6 | 181 | 7 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 6 | 181 | 7 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC966753 | 0.0 | KC966753.1 Brassica napus NAC transcription factor 51 (NAC51.1) mRNA, complete cds. |
Publications
? help Back to Top |
- Higgins JD,Ferdous M,Osman K,Franklin FC
The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis. Plant J., 2011. 65(3): p. 492-502 [PMID:21265901] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Zhang S, et al.
C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990] - Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation. Plant J., 2017. 90(3): p. 505-519 [PMID:28207953] - Elmayan T, et al.
Arabidopsis mutants impaired in cosuppression. Plant Cell, 1998. 10(10): p. 1747-58 [PMID:9761800]
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