PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122704.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 378aa    MW: 41789.2 Da    PI: 5.669
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122704.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.52e-27107189271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  XP_009122704.1 107 TGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfalpnndgtppdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 189
                     689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-46102195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.2E-35106189IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.26E-21109190IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.2E-25109189IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144589.05E-42194297IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.05E-41196314No hitNo description
SMARTSM011386.3E-63196345IPR014889Transcription factor DP, C-terminal
PfamPF087811.3E-41197314IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MTTTIGSNSN HNNRSDDGSV TNNNNNPSNR SWGTVVSAQS VSTSESMGSP SSKSEQTTTV  60
ATTSATDSAF IQLNNLDIQG DDAASQGPAS GVKKKKRGQR ATGPDKTGRG LRQFSMKVCE  120
KVESKGRTTY NEVADELVAE FALPNNDGTP PDQQQYDEKN IRRRVYDALN VLMAMDIISK  180
DKKEIQWRGL PRTSLSDIEE LKAERLSLRN RIEKKTAYAQ ELEEQYVGLQ NLIRRNEHLY  240
SSGNAPSGGV ALPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD NFVLKTMKFC  300
EQPPFNNAHN NNSQQTNILM LENNTEGIST DPVPPPQPAD MYQSHPQLHA QPRVIPTPVN  360
NNDAAQVASP PVSVKPEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-37100194193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.139180.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122704.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122704.10.0PREDICTED: transcription factor-like protein DPB
RefseqXP_018511146.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY20.0DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM4CZ830.0M4CZ83_BRARP; Uncharacterized protein
STRINGBra009530.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-173Transcription factor DP