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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009122682.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
Trihelix |
Protein Properties |
Length: 571aa MW: 64678.5 Da PI: 7.3433 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009122682.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 93.7 | 1.8e-29 | 114 | 199 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea
XP_009122682.1 114 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKLENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 199
8*************************************999*****************************98..55667*******85 PP
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2 | trihelix | 54 | 4.3e-17 | 404 | 490 | 1 | 82 |
trihelix 1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenl.nkrykkikegekkrtsessstcpyf 82
+W +qe+ +L e+r++m++++++ g++++ lWeev++k+ + gf +rs+ Ckekwe + n+++k+ k+++kkr+++sss +y+
XP_009122682.1 404 CWDEQEIIKLREIRSSMDSAFQEvleGSSDEFLWEEVAAKLTQLGFdQRSALICKEKWERIsNGKMKEKKQINKKRKENSSSCGVYY 490
7*********************655589******************999***********945799999999999966666544555 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 571 aa
Download sequence Send
to blast |
MEDHPSQYGI PELRQLMKGG GRTTSPSTSS HFPSDFFGFN LTAPPQQHRV QQFTTDHQEM 60 GFLPHGIHGL GGSSSTTAGN NSNLNASTCG GGVGFGGFLD GGGFSGGDGG ATGRWPRQET 120 LTLLEIRSRL DHKFKEANQK GPLWDEVSRI MSEEHGYQRS GKKCREKLEN LYKYYKKTKE 180 GKAGRQDGKH YRFFRQLEAL YGDSNNLVSI PNHNTQFVSN ALHGFHAQNV TTTTSNIHSV 240 DGLHGFHHQQ SLSLSNNYNS SEMELMTSSS EGNDSSSRRK KRSSWKAKIK EFIDVSMKRL 300 IERQDAWLEK LTKVIEDKEE QRMMKEEEWR KREAARVDKE HLFWAKERER MEGRDVAVIE 360 ALQYLTGKQL IKPLCSSPEE RNNENGSDQT MTTNNVSVKG SGRCWDEQEI IKLREIRSSM 420 DSAFQEVLEG SSDEFLWEEV AAKLTQLGFD QRSALICKEK WERISNGKMK EKKQINKKRK 480 ENSSSCGVYY PRTEENQIYN NQESGYNDND QHHQKMNEHG NNVGSSTSNA NAGNPSGAMA 540 ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}. |
Uniprot | TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF170837 | 0.0 | KF170837.1 Brassica rapa subsp. chinensis PTL mRNA, complete cds. |