PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009122624.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 1151aa MW: 129337 Da PI: 7.2985 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 1063 | 1086 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +C+ Cgk F+ + +L+ H+r+H XP_009122624.1 1063 RCTheGCGKKFRAHKYLVLHQRVH 1086 588889****************99 PP | |||||||
2 | zf-C2H2 | 11.4 | 0.001 | 1122 | 1148 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H XP_009122624.1 1122 YKCKveECGLSFRFVSDYSRHRRKtgH 1148 99*********************9777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 2.3E-14 | 17 | 57 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 14.326 | 18 | 59 | IPR003349 | JmjN domain |
Pfam | PF02375 | 4.1E-16 | 19 | 52 | IPR003349 | JmjN domain |
SMART | SM00558 | 8.7E-46 | 242 | 411 | IPR003347 | JmjC domain |
PROSITE profile | PS51184 | 35.242 | 245 | 411 | IPR003347 | JmjC domain |
SuperFamily | SSF51197 | 1.02E-25 | 257 | 409 | No hit | No description |
Pfam | PF02373 | 2.6E-37 | 275 | 394 | IPR003347 | JmjC domain |
SMART | SM00355 | 160 | 1039 | 1061 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 8.38E-8 | 1050 | 1099 | No hit | No description |
SMART | SM00355 | 0.057 | 1062 | 1086 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.464 | 1062 | 1091 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-6 | 1063 | 1085 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1064 | 1086 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-9 | 1086 | 1113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.066 | 1092 | 1116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.427 | 1092 | 1121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1094 | 1116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.39E-10 | 1103 | 1144 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.4E-10 | 1114 | 1145 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 4.8 | 1122 | 1148 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.951 | 1122 | 1151 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1124 | 1148 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1151 aa Download sequence Send to blast |
MGSSNVEIPN WLKAMPLAPV FRPTDTEFAD PIAYISKIEK QASAFGICKI IPPIPKPSKK 60 YVFCNLNKSL LRCPELASGV DVSKLGQEDR AVFTTRQQEL GQARKKSRGG EGGDVKQVWQ 120 SGGVYTLEQF ESKSKAFYKS QLGTVKEVSP VVVEALFWRA ASEKPMYIEY ANDVPGSAFG 180 EPEGHFRHFR QRKRRGRGFY QRKNGESSLP VVSPSLSAQD PSKKKNMDVV VVDEMEGTAG 240 WKLSNSSWNL QMIARSPGSV TRFMPDDIPG VTSPMVYIGM LFSWFAWHVE DHELHSMNYL 300 HTGSPKTWYA VPGDYALDFE EVIRKNSYGS NLDQLAALTQ LGEKTTLVSP EIIVSSDIPC 360 CRLVQNPGEF VVTFPRSYHV GFSHGFNCGE AANFGTPQWL NVAKEAAVRR AAMNYLPMLS 420 HQQLLYLLTM SFVSRVPRSL LPGGRSSRLR DRQREEREFL VKKAFVEDIL NENKNLSVLL 480 GEPGSRLVMW DPDLLPRHSV LALAATGVAT TPAVSSPAEA KSEIENKEEN PSLLEELSLF 540 MEKLKDVYYD DDDGQLNDFQ IDSGTLPCVA CGVLGFPFMS VVQPSENALK DLSERQGEID 600 ALEDKAESSE KSNCEWNTSS RYIRPRIFCL EHTIELQRLL QSRGGLKFLV ICHKDFQKFK 660 AHAAIVAEEV KVPFRYDDVL LESASKEELS LIDLAIEGEE NNEYGADWTS KLGINLRYCV 720 KVRKNSPTNK IQHALSLGGL FSDSSHVLDM STIKWLQRKS RSKAKPCSTT SGFTSRERLE 780 VKAERRLGEK EEVESQGGRK EEKIIQYSRK KKLNPNANRS RHASAVDSEM NNEIGDSADL 840 TSVTREHQGH SVALEPRTTN ANSEEEEQSQ VVLPTNREAV SEDIRHTEQQ EEQTHSSAQV 900 GLEVSETNIA SEKIVVDMVR DDDPLASNGD EASSSGLQAA DDENSMESEV ASSGNTKVIV 960 EAKKKRKIEL ESETNDYHPE SSIGFIKSPC EGLRSRGKRK VTCEETSSNL NEASDEEKKH 1020 TAKRLKKTPN TGSTTTQHNL CYQEGCKMTF KSKADLAAHK RNRCTHEGCG KKFRAHKYLV 1080 LHQRVHNDER PLACPWKGCS MNFKWQWART EHLRLHTGER PYKCKVEECG LSFRFVSDYS 1140 RHRRKTGHYV T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 3e-72 | 11 | 425 | 8 | 346 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 3e-72 | 11 | 425 | 8 | 346 | Arabidopsis JMJ13 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in cotyledons and leaves. Detected in inflorescences, stems, roots and siliques but not in shoot apical meristems or root tips. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18713399}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009122624.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY664500 | 0.0 | AY664500.1 Arabidopsis thaliana early flowering 6 (ELF6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122623.1 | 0.0 | PREDICTED: probable lysine-specific demethylase ELF6 isoform X1 | ||||
Refseq | XP_009122624.1 | 0.0 | PREDICTED: probable lysine-specific demethylase ELF6 isoform X2 | ||||
Swissprot | Q6BDA0 | 0.0 | ELF6_ARATH; Probable lysine-specific demethylase ELF6 | ||||
TrEMBL | A0A397XPG8 | 0.0 | A0A397XPG8_BRACM; Uncharacterized protein | ||||
STRING | Bra009474.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 0.0 | C2H2 family protein |
Publications ? help Back to Top | |||
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