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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009122601.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 554aa MW: 62016.8 Da PI: 4.1876 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009122601.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 170.8 | 4.3e-53 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+ +diyk+ePwdLp k ++k+++ ewyfFs dkky++g+++nrat++gyWk+tgkd+e+
XP_009122601.1 9 LAPGFRFHPTDEELVRYYLKRKVCNKPFTF-DAISVTDIYKSEPWDLPdKsMLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIR 102
579************************999.99**************96446666777************************************* PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ ++++vg+kktLv++kgrap+ge+t+Wvmheyrl
XP_009122601.1 103 N-GSRAVGMKKTLVYHKGRAPRGERTNWVMHEYRL 136
9.99*****************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 554 aa
Download sequence Send
to blast |
MGLGSVTSLA PGFRFHPTDE ELVRYYLKRK VCNKPFTFDA ISVTDIYKSE PWDLPDKSML 60 KSRDLEWYFF SMLDKKYSNG SKTNRATEKG YWKTTGKDRE IRNGSRAVGM KKTLVYHKGR 120 APRGERTNWV MHEYRLTDEE LKRAGAPLDA FVLCRIFQKS GTGPKNGEQY GAPYLEEEWE 180 EDKMTFVPEQ DALSEGLAVD DDVYVDIDEI DEKPENLVVY DAIPVQTNYC HGESSNNAES 240 GNYEDSGNYV VDSGGYIEQP TETFEEDQKP IIRDCSIQPC SLYPVEQIGC GVEDENAVNL 300 ETSNNNVFVA DPCYSDIPIE ADYLPDEPFM DPSNNLPLCD DLYLETNDLS GGGLQDDFNF 360 EDYLNFFDDE EAQNLTLDVS QLLGSQDAPP EQEGLDQKPS PEELEKEVVE KKESGEGSSS 420 KQDADVTDFD SDSKYPFLKK SSHMFGVPPS FASQFQTKDA AIRLHAAQSS GSVHVTAGMI 480 RISNMTPAVD SDMGWAYDKS GDLNVVLSFG LVQRDDAMSK TGGTSATRAM LIFLCLWVLL 540 LSVSFKIVTM VSAR
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-47 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-47 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-47 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-47 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-47 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-47 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-47 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KP641356 | 0.0 | KP641356.1 Brassica napus NAC transcription factor 78.1 (NAC78.1) mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Liang M, et al.
Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] - Gladman NP,Marshall RS,Lee KH,Vierstra RD
The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis. Plant Cell, 2016. 28(6): p. 1279-96 [PMID:27194708] - Tang Y,Zhao CY,Tan ST,Xue HW
Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078. PLoS Genet., 2016. 12(8): p. e1006252 [PMID:27529511]
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