PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122425.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 420aa    MW: 45976.7 Da    PI: 8.4315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH567e-18160209255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  XP_009122425.1 160 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 209
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-23157229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.225158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-19159228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-14160211No hitNo description
PfamPF000102.3E-15160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-13164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MMFTAAVQAG SGSDRNVVDE NSNSNSSSYA AAASGFTLWD ESGSGKKGQT RKENNAGERA  60
SIRATMGQCP VVERRSQSLT NTALSGFSSR SSSQGSGLKS QSFMDMLRSA KGTSQDDDLD  120
DEEDFVMKKE SSSTSQIHRD LRVKAEARGG GNDQKLNTPR SKHSATEQRR RSKINDRFQM  180
LRQLIPNSDQ KRDKASFLLE VIEYIQFLQE KTSKYETPYQ GWNHEPAKLL NWQRNNQQLV  240
PEGTVAFAPK LEEEKNNIPA PVLGTTQGVI IDRPETLNRA TPATGAFPLS AQSNSFISPV  300
IAGTPVTQLH TRVAASETLE PSQSSRSHTQ PLKEEGGDEE VHAGNISISS VYSQGLVKTL  360
REALENSGVD LTKASISVEI ELAKQSSSFK DHEPRGLVST GNDDPKQTRQ PKRLKTNNTS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122425.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533130.0AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122423.10.0PREDICTED: transcription factor BIM1 isoform X2
SwissprotQ9LEZ30.0BIM1_ARATH; Transcription factor BIM1
TrEMBLM4CYM50.0M4CYM5_BRARP; Uncharacterized protein
STRINGBra009322.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.30.0bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]