PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122367.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 149aa    MW: 17411.1 Da    PI: 9.4759
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.96.7e-1152110563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     k+ +r  +NR+AA++sR +K+++i+ L +k+  L  + ++L++++e+ +++ + l+ e+
  XP_009122367.1  52 KKLKRIVSNRVAAQKSRWKKLQYIDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREK 110
                     8999*******************************************999988877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-1048112IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.95650113IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.5E-1152107No hitNo description
SuperFamilySSF579595.98E-1152106No hitNo description
PfamPF001701.1E-852110IPR004827Basic-leucine zipper domain
CDDcd147039.55E-1153104No hitNo description
PROSITE patternPS0003605570IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSDPSFPVPT SFQVSNDGSQ VEEKKTGYLN YEVEPGFTIR LRQNIDPAMD PKKLKRIVSN  60
RVAAQKSRWK KLQYIDDLVK KSRDLNWQVS MLRSQVEMAS EQKQCLEREK MELKECMAGW  120
IQRFISDQGE IEANTAEIER LKKKMAHMI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122367.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122367.11e-108PREDICTED: basic leucine zipper 19 isoform X1
RefseqXP_013715347.11e-108basic leucine zipper 19-like
RefseqXP_013715349.11e-108basic leucine zipper 19-like
TrEMBLA0A397XVW41e-106A0A397XVW4_BRACM; Uncharacterized protein
STRINGBo9g175190.11e-106(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144181821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07160.17e-60bZIP family protein