PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122362.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 773aa    MW: 86005.8 Da    PI: 5.7871
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.62.8e-23230283155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k ++ Wt +LH+ F++a++++ G +kA+Pk+ile+m+v  Lt+e+v+SHLQkYR 
  XP_009122362.1 230 KSKITWTDDLHDLFLQAIRHI-GLDKAVPKKILEFMNVSYLTRENVASHLQKYRQ 283
                     6799*****************.********************************5 PP
2Response_reg74.24.9e-25181331109
                     EEEESSSHHHHHHHHHHHHHTTC.....EEEE..EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegy.....eeva..eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                     v++vdD+p+++e++ + lek +y     +e++  +++d++eal +lk ++  +Dli++D  mp+m+Gl+l k+i++e  +lp+iv+++  +    
  XP_009122362.1  18 VMVVDDDPVFLEIMSRTLEKLKYrdsstMEITviAVKDSREALSTLKIERnnIDLIVTDYYMPDMNGLQLKKQITQEYGNLPVIVMSSDTD--KE 110
                     89*****************666644444333335899*******99555555***********************************7776..77 PP

                     HHHHHTTESEEEESS--HHHHHH CS
    Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                     +e l  Ga++f+ Kp++  el+k
  XP_009122362.1 111 HESLTCGAMGFIQKPIKATELTK 133
                     99*****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.1E-2915143No hitNo description
SuperFamilySSF521722.99E-2616145IPR011006CheY-like superfamily
SMARTSM004485.5E-2116135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.29817139IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-2218133IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.94E-2519133No hitNo description
PROSITE profilePS512949.307227286IPR017930Myb domain
SuperFamilySSF466891.43E-17229287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-23229287IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-26230283IPR006447Myb domain, plants
PfamPF002491.7E-5234282IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MAFAQPFYNQ SSLLRINVMV VDDDPVFLEI MSRTLEKLKY RDSSTMEITV IAVKDSREAL  60
STLKIERNNI DLIVTDYYMP DMNGLQLKKQ ITQEYGNLPV IVMSSDTDKE HESLTCGAMG  120
FIQKPIKATE LTKFYQLALK CKRNGKSTLW TENNHNDTDV SISQQIQFFP EQDNLMMTKT  180
KKFSPRPDSR SMNSSNGTCV STDASRKNKK RKANGGSGDG VESLSQPSMK SKITWTDDLH  240
DLFLQAIRHI GLDKAVPKKI LEFMNVSYLT RENVASHLQK YRQFLRKVAE RSSLCSSNML  300
PSNGIDSIYP YPHTREPYYN NYTSSSSWYG TSLSNNRSFY SNPGHGLGQS RLLSNTSDPV  360
RSNQMPHSYM NRSSTYDTHR IGSNLTLPVE SNLNYSSQNV GRRSFLEPTA NKTSQTSQAL  420
GFEQHGLSAI NGSGFNNNTL ISYGSLAPNQ LGTNSYKGSI STQQGMTNGS LALNQPGMSA  480
YGSSTSTQPG MSSHISLTPN QPGRNSYGSL TAPQPRMSTH ESLSPNQQGI SSHKNLNSSQ  540
LGMDSNGSLS HDQPRMSSYE NLTSNQLGLS SHGFLTPNQP GLKSYGSATH NVGLNSFEGL  600
TTHQPGSSNF SYGLQSFLNN ENTAYEPQPL THAQAAAQTN IEIPQQENFS LFDELANINE  660
LLCDISNFEL DHNKQQEAVS TTQFELPANV STEMNQFFSL EDDDWTFVNT NQGFSNGETS  720
NNVAPETNSQ TFNMSTNHDQ EQDAQDFVDW SFLNPEDLAN EYDFMDSLFN GMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-19230289564ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in siliques. Also found in germinating seedlings, stems, flowers and roots, but not in rosette leaves. {ECO:0000269|PubMed:15173562, ECO:0000269|Ref.3}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891950.0AC189195.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122362.10.0PREDICTED: putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLM4CYI70.0M4CYI7_BRARP; Uncharacterized protein
STRINGBra009284.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21