PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122122.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 267aa    MW: 29745.3 Da    PI: 6.9772
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122122.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like971.4e-3078131155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  XP_009122122.1  78 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 131
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.05975134IPR017930Myb domain
SuperFamilySSF466892.33E-2075135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-3177136IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-2479131IPR006447Myb domain, plants
PfamPF002499.5E-881130IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MREEDSNWFA KWEEELPSPE ELIPLSQSLI TPDLAIAFDL RSPNQPQPQT TPPPQQTNSS  60
AEFAVDSSGD EPARTLKRPR LVWTPQLHKR FVDAVAHLGI KNAVPKTIMQ LMSVDGLTRE  120
NVASHLQKYR LYLKRMQSGG GGGGNVVGES DHLFASSPVP THFLHPTGRQ SSDHFIPSFV  180
PIASLQHHQP QFLHRQLSAV NFASQANNNN GKAMDQSLFL ARQSQQQQQQ VLTRPASLHL  240
HSQVANYADD LEQGANTVLT LFPTREN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-3378134157Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.36100.0bud| leaf| silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00056PBMTransfer from AT5G05090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122122.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122122.10.0PREDICTED: transcription factor PCL1-like
RefseqXP_013715661.10.0transcription factor MYBC1-like
SwissprotO222102e-58MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A397XQK40.0A0A397XQK4_BRACM; Uncharacterized protein
TrEMBLM4CXZ00.0M4CXZ0_BRARP; Uncharacterized protein
STRINGBra009087.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.11e-112G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]