PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009121986.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-other
Protein Properties Length: 484aa    MW: 54203.8 Da    PI: 7.5426
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009121986.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65e-192176257
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    +kR   t+ q+ +Le+++++++yps+e+++++A+++gLte+qV+ WF+ rR k+k+
  XP_009121986.1 21 KKRKLKTPMQVMALENFYNEHKYPSEEMKAKIAEEIGLTEKQVSGWFCHRRLKDKR 76
                    899***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-20576IPR009057Homeodomain-like
PROSITE profilePS5007116.8111777IPR001356Homeobox domain
SuperFamilySSF466892.99E-171984IPR009057Homeodomain-like
SMARTSM003891.6E-191981IPR001356Homeobox domain
PfamPF000461.5E-162176IPR001356Homeobox domain
CDDcd000861.16E-172177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MLSDSGEMPA DGDKHSAENS KKRKLKTPMQ VMALENFYNE HKYPSEEMKA KIAEEIGLTE  60
KQVSGWFCHR RLKDKRSVKE DGNNIGSQDR SSVVLQDRGS VLRQDSCGST KQTDYWNPKP  120
REVESQRLYD DDGEDSTSSE RRSSLHKNLV SSKDVESSRY VGRSEHHPQT MRSHGLSKPS  180
GYLKVKGDSE NVAITAVKRQ LGRQYREDGP PLGVEFDPLP PGAFEPQTNS VVVQEPIYVG  240
NQRRSHTPYF TGTRKSFVPG PSYEPARKPK MLLSDPYSSS EDEDDDDDDM MGGMEPGLGD  300
KQTLREPSFK SPSLSYSNTV PDRKGPPQGV PLTNSKKSHI SSKGRAEGSR YNLIDNFHNL  360
SGTSQTHDYD KSILNGGRKT GYLTKSSNML PLSGSRSSDS MERDTSSGMV GKYHGEKMNH  420
MKMHREKLHS TGEPLVTKRL KHGYPQQVYS ETFERKDQIN RSGVELPSSF NGDETEESSS  480
SSMD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009121986.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1225430.0AC122543.1 Genomic sequence for Brassica oleracea, clone B21H13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121986.10.0PREDICTED: uncharacterized protein LOC103846745 isoform X1
TrEMBLA0A397XQ750.0A0A397XQ75_BRACM; Uncharacterized protein
STRINGBra034196.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122022531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.10.0HB-other family protein