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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009121709.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 202aa MW: 22947 Da PI: 9.2053 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.2 | 1.7e-32 | 8 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp G+rFhPtd+el+ +yL +k +++l+ ++i+ +d++ ++P ++p ++eek+ yfF+k++++ + +r++ + +gyWk gk++e+++ XP_009121709.1 8 LPIGYRFHPTDQELILHYLLPKSFASPLPS-SIIPVFDVFFSHPLTFPG--DQEEKKRYFFCKKRREVS--SRTKISSGDGYWKPIGKEREIIA- 96 699*************************99.88***************3..4578899******99875..68888999***************. PP NAM 96 kgelvglkktLvfykgrap..kgektdWvmheyrl 128 g++vg+++tL+f++ +++ k +kt+W+m ey l XP_009121709.1 97 CGRTVGIRRTLAFHETNKSscKLNKTRWCMTEYCL 131 999***********7655511556*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-38 | 5 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.385 | 8 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-20 | 9 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MVNGGVKLPI GYRFHPTDQE LILHYLLPKS FASPLPSSII PVFDVFFSHP LTFPGDQEEK 60 KRYFFCKKRR EVSSRTKISS GDGYWKPIGK EREIIACGRT VGIRRTLAFH ETNKSSCKLN 120 KTRWCMTEYC LAGFASTKVS GEWAVYNVYE RKASKGRRQR KSRGRDDEED LNCIDFTIES 180 DHETGPPPPS SPTSSDESGS II |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-19 | 6 | 131 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.8915 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009121709.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966760 | 0.0 | KC966760.1 Brassica napus NAC transcription factor 84 (NAC84.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121709.1 | 1e-149 | PREDICTED: NAC domain-containing protein 83 | ||||
TrEMBL | M4CX41 | 1e-148 | M4CX41_BRARP; Uncharacterized protein | ||||
STRING | Bra008788.1-P | 1e-149 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7874 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 2e-99 | NAC domain containing protein 84 |