PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009121308.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 370aa    MW: 42641.9 Da    PI: 5.0286
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009121308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM675.5e-21101554128
             NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk...sgyWkatgk 88 
                     G++F+P d+el+++yL +k++gk++++   i+  d+y+ ePw L++ + +  +++ewy+F++r + ++     g++++r +t+   sg+W+   k
  XP_009121308.1  10 GIQFQPYDDELINQYLIPKLKGKPCRE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYFVTRTQFAKknigCGQKAKRkITRdddSGTWRVYAK 101
                     99**********************888...9999**********86444444889******99987774444467777745556779****9999 PP

             NAM  89 dkevlskkgelvglkktLvfy..............kgrapkgektdWvmheyrl 128
                     +    +++++++g+k++L f               +  + +g + +W+m ey l
  XP_009121308.1 102 EGITEKETTKTIGVKQSLNFVrrnvnnkklkrgdgTSCDVSGDSESWIMTEYML 155
                     87777779999**********7777666555443224566788999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.2967173IPR003441NAC domain
SuperFamilySSF1019419.94E-229171IPR003441NAC domain
PfamPF023653.8E-1510154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MYEYNDEDGG IQFQPYDDEL INQYLIPKLK GKPCREITMK DVYSKEPWLL DHPMGSFFKK  60
NEWYYFVTRT QFAKKNIGCG QKAKRKITRD DDSGTWRVYA KEGITEKETT KTIGVKQSLN  120
FVRRNVNNKK LKRGDGTSCD VSGDSESWIM TEYMLPEEKG KFHELVICKI HVIKNSKKKD  180
DDHHEACTSS NHHHHYVSPP INIADRGTLL APILEKQPIN IVDHETFISP FLEQQPTNIV  240
DQEIFLSPFL EVQPTNITCN IQENDKDDHE ALIPYHHHEF VADCYTEQQP INEAHGHVPN  300
IPLIGSEQEA EIEERIQELI NSLTTMNVSS LPMEEDDGIL NYDAPFYQDL LESVCYPPPL  360
PKESSKTLGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009121308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022548725.10.0uncharacterized protein LOC111201308
TrEMBLA0A3P6CI020.0A0A3P6CI02_BRACM; Uncharacterized protein
STRINGBo9g135860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.13e-12NAC domain containing protein 35