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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009121156.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 899aa MW: 99735.4 Da PI: 4.7022 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 88 | 7.9e-28 | 613 | 663 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ XP_009121156.1 613 EKTIGLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 663 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.836 | 602 | 683 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.7E-24 | 616 | 663 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 7.57E-24 | 791 | 886 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.5E-23 | 799 | 882 | No hit | No description |
SMART | SM00666 | 3.0E-26 | 801 | 884 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 26.065 | 801 | 884 | IPR000270 | PB1 domain |
Pfam | PF00564 | 4.9E-16 | 802 | 883 | IPR000270 | PB1 domain |
CDD | cd06407 | 4.96E-43 | 802 | 883 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 899 aa Download sequence Send to blast |
MGLDMEDDGG SDGGEGNGGF SPNSSFGAFP ETAMDLDFMD ELLFDGCWLE TTDSKSLKET 60 EEAASDSTAM NANSSFLCFG ENPSQDNFSN EETERMNQEG FDQAEKFLLD EAEVGRSWWI 120 APRTREDPCS SVKERLLRAI SGLEEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK 180 YSSLAKYRHV SETYNFPADE GSTEGGLPGR VFLQKFPEWT PDVRFFRSDE YPRIKEAQKC 240 DVRGSLALPV FERCSGTCLG VVEVVTTTQK MNYRPELENI CKALEAVDLR SSSNLKPPNN 300 ESLQVYNDFY YAALPEISDF LASVCRRYDL PLALSWAPCA QQGKGGSRHS DENFSQCVST 360 IDSACFVLDE ESKYFLEACS EHHLLQGEGI VGKAFKATKL CFVPEVTTFS KTNYPLAHHA 420 KISGLHAALA VPLKSKCNGL VEFVLEFFFP KGCLDTEAKQ EMLKSLSATL QQDFRSSNLV 480 IDKDLELEVV LPVREDMVLS ENPLTGAETA EALREIHLLQ ESSWISHMIK ANEKGKDVSL 540 SWEYQNEDPK DEFKLSPGWD NSQLDPAPNN IPSEAEQFQQ GSTPGLRVDA GPSTESASTG 600 GRRPGEKRRT KTEKTIGLDV LRQYFAGSLK DAAKSIGVCP TTLKRICRHH GITRWPSRKI 660 KKVGHSLKKL QLVMDSVQGA QGSIPLDSFY TSFPELSSPN ISSNGSSLKN NEQLHHYNVP 720 IENGGPGEDK PAPRSPSSSC SGSNTNTPNA DGVVKEAHSE AELQNGNQEE TKCLARTQSH 780 NIFKEPPLPG SSKMSFRDGG GIKVKATFGE AIIRFTLLPS WGYTELQQEI TRRFNIVDVS 840 WFDLKYLDDD EEWVLLTCEA DLEECIDIYR SSQSQTIKIS LHDPFQVKLG GSFGSSGPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009121156.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121154.1 | 0.0 | PREDICTED: protein NLP1 isoform X1 | ||||
Refseq | XP_009121155.1 | 0.0 | PREDICTED: protein NLP1 isoform X1 | ||||
Refseq | XP_009121156.1 | 0.0 | PREDICTED: protein NLP1 isoform X1 | ||||
Refseq | XP_013666605.1 | 0.0 | protein NLP1-like isoform X1 | ||||
Refseq | XP_013666606.1 | 0.0 | protein NLP1-like isoform X1 | ||||
Refseq | XP_013666607.1 | 0.0 | protein NLP1-like isoform X1 | ||||
Swissprot | Q8H111 | 0.0 | NLP1_ARATH; Protein NLP1 | ||||
TrEMBL | A0A3P6BIG6 | 0.0 | A0A3P6BIG6_BRACM; Uncharacterized protein | ||||
STRING | Bra002025.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17150.1 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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