PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120624.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 376aa    MW: 42984.2 Da    PI: 7.2252
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-07219241123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cgk F+r  nL+ H+r H
  XP_009120624.1 219 HYCQICGKGFKRDANLRMHMRAH 241
                     68*******************99 PP
2zf-C2H212.30.00051340355621
                     TTEEESSHHHHHHHHH CS
         zf-C2H2   6 CgksFsrksnLkrHir 21 
                     Cg++Fsrk+ L++H +
  XP_009120624.1 340 CGTRFSRKDKLMSHVS 355
                     **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.99E-6217244No hitNo description
SMARTSM003550.0028219241IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.632219246IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-6219246IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
SMARTSM00355190270303IPR015880Zinc finger, C2H2-like
SMARTSM0035541308330IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MNQEEHMNQG RYIMSQVEGS MSCFSETNSS STIYMNPMMA ATRSSGEDNG IQLSLLLNLS  60
TIQDKVHEIQ SLVNFFMISP NNNNQSSEST SSLAAANVES LVQDIITAAS SMMLTCQQLQ  120
SSTNSNSNID TNQTADAMVM EFSQDFDPDR DFMGESSINI LDVQERRHVS FLDQTTQNLD  180
WYGTETTNPK KDIHRSKSRL GNYEIVELSV EDLLAKYTHY CQICGKGFKR DANLRMHMRA  240
HGDEYKTREA LISPTSRDKN VEYSSMRYYY SCPHQGCRWN QRHEKFQPLK SVICAKNHYK  300
RSHCPKIYMC TRCNVKHFSV LSDLRTHEKH CGDIKWVCSC GTRFSRKDKL MSHVSLFSGH  360
SPAHEPSQQQ PPMITP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120624.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT240.0STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A3P6CRX10.0A0A3P6CRX1_BRACM; Uncharacterized protein
TrEMBLM4CE070.0M4CE07_BRARP; Uncharacterized protein
STRINGBra002438.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-168C2H2 family protein