PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009120616.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 333aa MW: 38571.6 Da PI: 6.9988 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.6e-05 | 236 | 259 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+Cp+C+ +F ++ + Hi++ H XP_009120616.1 236 YTCPKCKDVFDTSQKFAAHISSvH 259 9*******************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.203 | 236 | 264 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 238 | 259 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence Send to blast |
MYSIPNGLNS YGDNTMNLHD SVPTQMNSSF GDPETKMFRS MFTTSVITNH HGLFSSSHAS 60 NCYRDSSSFG FNNSHAAYQM RTNMVSDVVD YFPINHNPQV SQVSITQTIT RRYSVIVPTR 120 SLITAQNEYE RAMNPNISYP SFYPQTFVDN QRTHPQTFVD NERNILNPTP LNTIYPRNVH 180 QFSFSPNHHH DQHVPHRRPV IKRRKFEEIF DGFDFEDNGV YDGRTHSLPY EKYGPYTCPK 240 CKDVFDTSQK FAAHISSVHY KNETVEEKAK RYSARNKRRF RKIDQTMHDE SQMIQPEERV 300 VEESGSNNNI ASGIEASQQQ LVVKEEPTYD VVD |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00523 | DAP | Transfer from AT5G22990 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009120616.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009120616.1 | 0.0 | PREDICTED: uncharacterized protein LOC103845497 | ||||
TrEMBL | M4CE16 | 0.0 | M4CE16_BRARP; Uncharacterized protein | ||||
STRING | Bra002447.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1924 | 19 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22990.1 | 1e-109 | C2H2-like zinc finger protein |