PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120342.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 436aa    MW: 49091.9 Da    PI: 5.0582
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.3e-11387434247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + WT+eE e l  +vk++G+  Wk I +  +     Rt+ ++k++w+++
   XP_009120342.1 387 KFWTPEEVEALRAGVKEYGKA-WKDIKNANPavlAQRTEVDLKDKWRNL 434
                      67*****************99.************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.104381436IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-13383436IPR009057Homeodomain-like
SuperFamilySSF466898.58E-13383435IPR009057Homeodomain-like
SMARTSM007174.1E-4385436IPR001005SANT/Myb domain
CDDcd116603.72E-16387436No hitNo description
PfamPF139213.4E-8389434No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEVMDKWVAE FLIRSQHNPT VSPTNLLSAL RFGDSDECVT LKVSSVLRDL HDSLLRGSVD  60
EGTLDLLEIL EKLQRSVITE SHKSAYCWTA AECTLRFMWP LDPLDGLFTD ALERIWTKRI  120
GSLKESGSGL VSDELVKWET DLKKAVEDPE MYQRIRESNI RYTAISFLNQ LLKEQWGLLG  180
SSSLEAVAQR RFRNRKGENN VEGDGVRSRE GLNGVGERVG RMESDNIDNS NENGDNRDVE  240
GVGCLEDDGI DKVNEQLAAE EEGTMGAQEQ EHESSLDKGD KMAARELKDY LLEIQRQIDP  300
PSTRQVQEPN NAFDHSVNVT PQPSRVKRSG TSGQDHIETP QQDNASEKGS SSQGTWSGRV  360
RPRLSSPVPL NVSPLKKINS PVRRPKKFWT PEEVEALRAG VKEYGKAWKD IKNANPAVLA  420
QRTEVDLKDK WRNLVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120342.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893550.0AC189355.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043M07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120342.10.0PREDICTED: uncharacterized protein LOC103845260 isoform X1
TrEMBLA0A078H6E70.0A0A078H6E7_BRANA; BnaA10g11980D protein
STRINGBra002659.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.20.0MYB_related family protein