PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120143.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 673aa    MW: 73009.5 Da    PI: 6.3021
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120143.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.8e-32261318260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK vkgse+prsYY+Ct ++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  XP_009120143.1 261 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCPVKKKVERSR-EGHITEIIYKGAHNHSK 318
                     8****************************************.***************85 PP
2WRKY103.98.9e-33478536159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  XP_009120143.1 478 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 536
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-29254319IPR003657WRKY domain
SuperFamilySSF1182901.83E-25258319IPR003657WRKY domain
SMARTSM007742.7E-35260318IPR003657WRKY domain
PROSITE profilePS5081123.491261319IPR003657WRKY domain
PfamPF031061.5E-24261316IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.7E-37463538IPR003657WRKY domain
SuperFamilySSF1182901.57E-28470538IPR003657WRKY domain
PROSITE profilePS5081138.136473538IPR003657WRKY domain
SMARTSM007741.8E-37478537IPR003657WRKY domain
PfamPF031068.6E-25479536IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MSGFDENVAV MGEWVPCNPT PGTLFSSSIG EDKTSKRVLE RELSLNHGQV TGLQEDTTGN  60
NDNNNDSSQN NNVSRGGLRE RIAARAGFNT PKLNTENIRS NAGFSMDSSS LRSPCLTISS  120
PGLSPATLLE SPVFLSNPLA QPSPTTGKFP FLPGVNSNGM FSDKAKDEFF DNIGASFTFQ  180
PVSRSSSSFF QGGGTEMVPV DYGSYNNRSS HQSPEDVTKN VGYTGQKRKT SETVDHQEEE  240
EEVEEEQRRG GDSMVGGAPA EDGYNWRKYG QKLVKGSEYP RSYYKCTNPN CPVKKKVERS  300
REGHITEIIY KGAHNHSKPP PNRRSGMQVD GTDQAEQQQQ QQQQQRDSAP TWVNCNNTQQ  360
QVESNENNVQ EGFEYGNQSG SVQAQTGGGQ FESGDGNVGV VVVDASSTFS NEEDEDDRGT  420
HGSASLGYDG GGGGGGEGDE SESKRRKLEA YAAEMSGATR AIREPRVVVQ TTSDVDILDD  480
GYRWRKYGQK VVKGNPNPRS YYKCTAPGCT VRKHVERASH DLKSVITTYE GKHNHDVPAA  540
RNSSHGGGGN GNSGGSAAQP HHFHEQPRGR YERQLTASNH QSPFGRPFSF QPHLGPPSGY  600
SFGLGQTGLA NLSLPGLGFG QGKLPGLPHP YMTQPGGMSE AMMHSRGMEP KVEPVSETGQ  660
SVYNQIMSRL PQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37261539878Probable WRKY transcription factor 4
2lex_A6e-37261539878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120143.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841040.0FJ384104.1 Brassica napus cultivar Westar WRKY transcription factor 2 (WRKY2) mRNA, WRKY2-2 allele, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611485.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_013611486.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLM4CF460.0M4CF46_BRARP; Uncharacterized protein
STRINGBra002828.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]