PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120137.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 465aa    MW: 51638.3 Da    PI: 5.9424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00117496123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C  Cgk+F++   L  H r H
  XP_009120137.1 74 HICCECGKRFKSGKALGGHKRIH 96
                    68*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.56E-67099No hitNo description
Gene3DG3DSA:3.30.160.609.2E-57196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.197496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9774101IPR007087Zinc finger, C2H2
PfamPF139121.5E-77496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM003552.9126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954126148IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
PfamPF139120.0056128149IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-7310333No hitNo description
SMARTSM003550.55311333IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328311338IPR007087Zinc finger, C2H2
PfamPF139124.5E-10311335IPR007087Zinc finger, C2H2
PROSITE patternPS000280313333IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-7375402No hitNo description
SMARTSM003550.14380402IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494380402IPR007087Zinc finger, C2H2
PfamPF139121.2E-11380403IPR007087Zinc finger, C2H2
PROSITE patternPS000280382402IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDQCRFSLGR PRLGSIKFKV PKSSQPFISQ KRKEMEEEDQ AEEEAKSIGF REEEEDGEDD  60
DGAKSIEEEE EKKHICCECG KRFKSGKALG GHKRIHVLEA RKFSMVRPKM VAGAVGRSEE  120
RDDFEVDCCV CHKKFTSMKA LYGHMRFHPD RGWKGVLPPH HHHPLDHDGG EFISSDYDDD  180
DDGDGDYEDD DENSELWDNH WGLDNVVDLK DSIKGWAVTG KRGRRSALKD PPPEYVDAKD  240
LLFLATTAEA VDLDAAETCD SRSVEEMMKK RKKKRKRLSE MEKESTSSHD HHHQLEVGAA  300
EEGGGGAREK HVCVTCNKSF ASYQALGGHR ASHNKVRISE NHQARANSEA VLLGTEAMMA  360
GLATAQGPNT SLSIGNKGDH VCNICQKSFT TGQALGGHKR CHWPGPTSND AATAPVPASN  420
ESATTAPTPL VACSSSQVTE TVQEEKKLKR KFLEFDLNEL PPNEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268272KKRKK
2268276KKRKKKRKR
3270276RKKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120137.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120137.10.0PREDICTED: zinc finger protein ZAT4
TrEMBLM4CF540.0M4CF54_BRARP; Uncharacterized protein
STRINGBra002836.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-132C2H2 family protein