PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 219aa    MW: 25357.3 Da    PI: 6.4442
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119790.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.13.2e-2751366127
             NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                      F+P ++el+++yL++k+++++ ++ + i+ev+i+++eP dLp  +k++ + + wyf s+ +k   + +r++ra k+g Wk tg++ ++++++g+
  XP_009119790.1   5 TFNPPEDELINYYLNNKITENDDPEGKQINEVNICHHEPADLPglAKIE-SGHTWYFISPVEKF-GKLNRRKRASKTGHWKITGNSCTIKDTDGN 97 
                     7*********************999899***************422443.45678888877665.6788999*********************** PP

             NAM  99 lvglkktLvfykgrapkge..........ktdWvmheyr 127
                      +glkk Lvf ++++++++          k +W++he++
  XP_009119790.1  98 PIGLKKFLVFQENKNRRSStllpttvqqhKFTWIIHEFH 136
                     ***********75555544455555555599*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.1221166IPR003441NAC domain
SuperFamilySSF1019412.35E-304149IPR003441NAC domain
PfamPF023651.0E-164136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MNRYTFNPPE DELINYYLNN KITENDDPEG KQINEVNICH HEPADLPGLA KIESGHTWYF  60
ISPVEKFGKL NRRKRASKTG HWKITGNSCT IKDTDGNPIG LKKFLVFQEN KNRRSSTLLP  120
TTVQQHKFTW IIHEFHSFLH HPNKMLTHHK DPVEDYGGDY CNDLEELTQS WEQGESNGLL  180
RRENGHVYGQ NIMENSNHLE ISEAMMGPVT FPTPNTDQI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511050.11e-150PREDICTED: NAC domain-containing protein 62 isoform X1
TrEMBLA0A397XHE81e-133A0A397XHE8_BRACM; Uncharacterized protein (Fragment)
STRINGBra033297.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.11e-100NAC domain containing protein 49