PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119787.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 219aa    MW: 23374.1 Da    PI: 8.7792
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119787.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.18.6e-3761402127
             NAM   2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     p+GfrF+Ptdee+ + yLk k ++g++ +++evi++vdiy+++P +L  +   + k++++ +yfF+++d++y++g+r++r+tksg Wk+tg +++
  XP_009119787.1   6 PVGFRFRPTDEEIFNPYLKSKnMDGNTSHVDEVISTVDIYSFDPLELAsQstsTRKETDNVLYFFCPKDNRYNRGERQSRKTKSGSWKKTGVTTN 100
                     89*****************99355556888889**************843332222234466********************************* PP

             NAM  92 vlsk..kgelvglkktLvfy..kgrapkgektdWvmheyr 127
                     +++k  + e++g k+++vf   k    +  k+dWvmhey 
  XP_009119787.1 101 IMRKrgDCEKIGEKRVFVFQysKILGGSKPKSDWVMHEYV 140
                     ***9666678*********844223344458********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.7715162IPR003441NAC domain
SuperFamilySSF1019413.53E-395162IPR003441NAC domain
PfamPF023651.6E-216140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVDPHPVGFR FRPTDEEIFN PYLKSKNMDG NTSHVDEVIS TVDIYSFDPL ELASQSTSTR  60
KETDNVLYFF CPKDNRYNRG ERQSRKTKSG SWKKTGVTTN IMRKRGDCEK IGEKRVFVFQ  120
YSKILGGSKP KSDWVMHEYV ATFVFPAQTP MVTYALCKVM FKGDASDLPS SSAAAPAGGG  180
GSGGSGGGGC KGGGGSGGGG GGCDGSSGSG GGGCDWRWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-20616718170NO APICAL MERISTEM PROTEIN
1ut4_B1e-20616718170NO APICAL MERISTEM PROTEIN
1ut7_A1e-20616718170NO APICAL MERISTEM PROTEIN
1ut7_B1e-20616718170NO APICAL MERISTEM PROTEIN
3swm_A2e-20616721173NAC domain-containing protein 19
3swm_B2e-20616721173NAC domain-containing protein 19
3swm_C2e-20616721173NAC domain-containing protein 19
3swm_D2e-20616721173NAC domain-containing protein 19
3swp_A2e-20616721173NAC domain-containing protein 19
3swp_B2e-20616721173NAC domain-containing protein 19
3swp_C2e-20616721173NAC domain-containing protein 19
3swp_D2e-20616721173NAC domain-containing protein 19
4dul_A1e-20616718170NAC domain-containing protein 19
4dul_B1e-20616718170NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181195SGGSGGGGCKGGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119787.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022548551.11e-156NAC domain-containing protein 68-like
SwissprotO819132e-58NAC4_ARATH; NAC domain-containing protein 4
TrEMBLM4EWX11e-155M4EWX1_BRARP; Uncharacterized protein
STRINGBra033306.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.11e-59NAC domain containing protein 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]