PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009119787.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 219aa MW: 23374.1 Da PI: 8.7792

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009119787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	118.1	8.6e-37	6	140	2	127
NAM 2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 p+GfrF+Ptdee+ + yLk k ++g++ +++evi++vdiy+++P +L + + k++++ +yfF+++d++y++g+r++r+tksg Wk+tg +++ XP_009119787.1 6 PVGFRFRPTDEEIFNPYLKSKnMDGNTSHVDEVISTVDIYSFDPLELAsQstsTRKETDNVLYFFCPKDNRYNRGERQSRKTKSGSWKKTGVTTN 100 89***************99355556888889**********843332222234466***************************** PP NAM 92 vlsk..kgelvglkktLvfy..kgrapkgektdWvmheyr 127 +++k + e++g k+++vf k + k+dWvmhey XP_009119787.1 101 IMRKrgDCEKIGEKRVFVFQysKILGGSKPKSDWVMHEYV 140 9666678******844223344458******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.771	5	162	IPR003441	NAC domain
SuperFamily	SSF101941	3.53E-39	5	162	IPR003441	NAC domain
Pfam	PF02365	1.6E-21	6	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MVDPHPVGFR FRPTDEEIFN PYLKSKNMDG NTSHVDEVIS TVDIYSFDPL ELASQSTSTR 60 KETDNVLYFF CPKDNRYNRG ERQSRKTKSG SWKKTGVTTN IMRKRGDCEK IGEKRVFVFQ 120 YSKILGGSKP KSDWVMHEYV ATFVFPAQTP MVTYALCKVM FKGDASDLPS SSAAAPAGGG 180 GSGGSGGGGC KGGGGSGGGG GGCDGSSGSG GGGCDWRWL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-20	6	167	18	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-20	6	167	18	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-20	6	167	18	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-20	6	167	18	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-20	6	167	21	173	NAC domain-containing protein 19
3swm_B	2e-20	6	167	21	173	NAC domain-containing protein 19
3swm_C	2e-20	6	167	21	173	NAC domain-containing protein 19
3swm_D	2e-20	6	167	21	173	NAC domain-containing protein 19
3swp_A	2e-20	6	167	21	173	NAC domain-containing protein 19
3swp_B	2e-20	6	167	21	173	NAC domain-containing protein 19
3swp_C	2e-20	6	167	21	173	NAC domain-containing protein 19
3swp_D	2e-20	6	167	21	173	NAC domain-containing protein 19
4dul_A	1e-20	6	167	18	170	NAC domain-containing protein 19
4dul_B	1e-20	6	167	18	170	NAC domain-containing protein 19
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	195	SGGSGGGGCKGGGGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009119787.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022548551.1	1e-156	NAC domain-containing protein 68-like
Swissprot	O81913	2e-58	NAC4_ARATH; NAC domain-containing protein 4
TrEMBL	M4EWX1	1e-155	M4EWX1_BRARP; Uncharacterized protein
STRING	Bra033306.1-P	1e-155	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-59	NAC domain containing protein 5

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]