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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009119784.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 396aa MW: 44853 Da PI: 5.6597 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 117.2 | 1.6e-36 | 5 | 138 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p+G+rFhPtdee+v +y ++k +e+++ +++ev+++vdiy+++Pw+Lp k +++++++ wyfF +++ ++++g+r++r tksg+Wk+tg + +++ XP_009119784.1 5 PVGYRFHPTDEEIVGDYVRPKnIESNTSRVDEVMNTVDIYEFDPWELPyKsRINSTDEVWYFFGCKKDQQNRGERQSRRTKSGFWKKTGVTMDIM 99 79*****************99567777889999**************96358888999************************************* PP NAM 94 sk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127 +k ++e++g k+++vf p+ k+dWvmhe XP_009119784.1 100 RKrgNREKIGEKRVFVFQyskILGGPSKPKSDWVMHEHV 138 *9877888*********854322567778********75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-38 | 3 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.734 | 4 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-20 | 5 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MVDPPVGYRF HPTDEEIVGD YVRPKNIESN TSRVDEVMNT VDIYEFDPWE LPYKSRINST 60 DEVWYFFGCK KDQQNRGERQ SRRTKSGFWK KTGVTMDIMR KRGNREKIGE KRVFVFQYSK 120 ILGGPSKPKS DWVMHEHVAT FLSPDSPNQT MMMMKYTVCK VMFKGDERVL SSSSSSSAGQ 180 IQHHHLSLIP HVNSNNSGGL SSETEVDPRQ FTGFPHLEEE TMFVDEILRG FNNPPTDDWN 240 SLFSNDEEQG NTMFMQEDRN DYRPKMSLTG VFIGHSDDDS DSDSISSRTT TGSIKTSSTC 300 VTFGCSNHPT DLSESPSSST IESGSVTQEV SEALGTNTVT SERKMNPCDD DAQLSEIGGD 360 KIDQEMVIKN KRAGYIYRMM QKITKKIKLR SCISGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-20 | 5 | 164 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-20 | 5 | 164 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-20 | 5 | 164 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-20 | 5 | 164 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-20 | 5 | 161 | 21 | 165 | NAC domain-containing protein 19 |
3swm_B | 1e-20 | 5 | 161 | 21 | 165 | NAC domain-containing protein 19 |
3swm_C | 1e-20 | 5 | 161 | 21 | 165 | NAC domain-containing protein 19 |
3swm_D | 1e-20 | 5 | 161 | 21 | 165 | NAC domain-containing protein 19 |
3swp_A | 1e-20 | 5 | 161 | 21 | 165 | NAC domain-containing protein 19 |
3swp_B | 1e-20 | 5 | 161 | 21 | 165 | NAC domain-containing protein 19 |
3swp_C | 1e-20 | 5 | 161 | 21 | 165 | NAC domain-containing protein 19 |
3swp_D | 1e-20 | 5 | 161 | 21 | 165 | NAC domain-containing protein 19 |
4dul_A | 1e-20 | 5 | 164 | 18 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-20 | 5 | 164 | 18 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009119784.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009119784.1 | 0.0 | PREDICTED: NAC domain-containing protein 5-like | ||||
Refseq | XP_022548699.1 | 0.0 | NAC domain-containing protein 5-like | ||||
Swissprot | O81914 | 1e-118 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | M4EWX3 | 0.0 | M4EWX3_BRARP; Uncharacterized protein | ||||
STRING | Bra033308.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 1e-102 | NAC domain containing protein 5 |
Publications ? help Back to Top | |||
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