PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119767.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 877aa    MW: 100637 Da    PI: 4.3354
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.84.2e-2351362128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknra......tksgyWkatgk 88 
                     p+G rF+Pt+  lv+ +Lk+kve++      +ik++++y   Pw L++ ++   +++ewy+F++r+ +  +    +r+         g+Wk+ gk
  XP_009119767.1   5 PRGSRFQPTELGLVKLHLKNKVEKNIS---GFIKTLNVYGDAPWLLHHDTNPlySRNEWYYFVPRKIRGVR--SVSRMvpsngdSLGGTWKSVGK 94 
                     89********************99874...46**************85332233778*******9876553..33343222332559******** PP

             NAM  89 dkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                     +k+++++++el+g k+ Lvf k+   + + ektdW m+ey+l
  XP_009119767.1  95 KKDIKKNDKELMGYKTELVFKKNvaGELEKEKTDWHMDEYSL 136
                     *********************7532445568*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-263152IPR003441NAC domain
PROSITE profilePS5100529.6974154IPR003441NAC domain
PfamPF023651.6E-155136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MRTYPRGSRF QPTELGLVKL HLKNKVEKNI SGFIKTLNVY GDAPWLLHHD TNPLYSRNEW  60
YYFVPRKIRG VRSVSRMVPS NGDSLGGTWK SVGKKKDIKK NDKELMGYKT ELVFKKNVAG  120
ELEKEKTDWH MDEYSLHRNG DEFHDLVLCH VRLLHSDETF KPHVPAAHQV DHVKKDNNNN  180
NDVVLPNQEQ QEAGSAMQGY EGGNVNQPQQ QPEEQEDYIL VDRHLRSNHN QRQNLLEDVV  240
YPNGRGDFNQ HQQQQQDQED SLNLLHPPFQ TNVNQEHYPL GDIAYHNAEG DMTGYGLMPS  300
FNQGNDVNQQ QDSPDPLLLP PLQQSNDNQE PHPLDDIAFD DNLTIDIDEL LKILDEGKEQ  360
EDPPTLPLPP PLPSNVNQAP CLSWDTNFAP SQVENNYNNN TVLPNQEQRE GGFANHYDMT  420
MMVEKEHGDI KQQYQQELQQ IDRQSLFYDP EWDDLRFSSD LIMPNMDVSL TQQQLRELEE  480
ERLQLVQPVP QGQDSGVHAA QVMPPPPPQS NNNHGQRPLV PSQVESYNNN TVLPNQEQRE  540
GGFANHYDMT MMVEKEHGDI KQQYQQELQQ IDRQSLFYDP EWDDLRFSSD LIMPNMDVSL  600
TQQQLRELEE ERLQLVQPVP QGQDSGVHAA QVMPPPPPQS NNNHGQRPLV PSQVESYNNN  660
TVLPNQEQRE GGFANHYDMT MMVEKEHGDV KQDQEQRIKD LLSYLLSDDF GFDGPEDGPI  720
APELLKLLEP VPQAQDSEVM PPPPQSNDNH GQLPLVPSQV ENHNNTNVLP KQEQQEAGFA  780
YQNDMTMVAN EHGDVKQPQD QEQQHIDLQS LLRDPEWDDL RCDFGGPEVG LILQNMEVSM  840
TQQEEQEVQE EILKRMLEPV PQPQDSGVHA DQVMPKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119767.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018510860.10.0PREDICTED: uncharacterized protein LOC103844301
TrEMBLM4EX700.0M4EX70_BRARP; Uncharacterized protein
STRINGBra033406.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1883757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.16e-31NAC domain containing protein 6