PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119682.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 584aa    MW: 64181.8 Da    PI: 6.4565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12426471454
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  XP_009119682.1 426 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 471
                     799***********************66......***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.2E-4954244IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.09E-18422491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.326422471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.91E-14425476No hitNo description
Gene3DG3DSA:4.10.280.101.0E-17426485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10426471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16428477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MSNNNNNNNS SSVWNEDDKA IVASLLGKKA LDYLLSNSVP NANLLMTVGS DDNLQNKLSD  60
LVETPNSSNF SWNYAIFWQV SRSKSGDLVL CWGDGSCREP KDGERSEMMR MLSMGREEET  120
HQTLRKRVLQ KLHALFGGLD DEEDSCALVL DRVTDTEMFL LASMYFSFPR GQGGPGKCFH  180
SSQPVWLSDL VNSGSDYCVR SFLAKSAGIQ TVVLVPTDIG VVELGSTSCL PHSDESLSSI  240
RLSFSSPPPP PPPPPVRLPV VVANHNDDNS SSKIFGKDLH SSSGFLHQQQ HRQFREKLTV  300
RKMDDNRVPK RLDGNNNRFM FSNPITTMTT STWIPPEAPS REDFKFLPLQ QTSSSSHRLL  360
PPAQMQIDFS GASSRPSDNN SDGGGGGGGG GGDWSDLVGG VDESGGDNRP RKRGRRPANG  420
RAEALNHVEA ERQRREKLNQ RFYALRSVVP NISKMDKASL LGDAVSYINE LYAKLKVMEA  480
EREKLGYSSN PLICLEPPAV NVQTAGEDVA VTVNCSLDSH PASRIFHAFE EAKVEVINAK  540
LEVPQDVVLH TFVIKSEEVT KEKLISALSR EQSGSVQSRT SSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-26420485265Transcription factor MYC2
5gnj_B4e-26420485265Transcription factor MYC2
5gnj_E4e-26420485265Transcription factor MYC2
5gnj_F4e-26420485265Transcription factor MYC2
5gnj_G4e-26420485265Transcription factor MYC2
5gnj_I4e-26420485265Transcription factor MYC2
5gnj_M4e-26420485265Transcription factor MYC2
5gnj_N4e-26420485265Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119682.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119682.10.0PREDICTED: transcription factor bHLH13
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLM4EWT80.0M4EWT8_BRARP; Uncharacterized protein
STRINGBra033273.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  2. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]