PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119656.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 251aa    MW: 28623.2 Da    PI: 8.4587
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.74.6e-4051323127
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +G+rF Ptdeelv++yL+ k +g +   ++++vi++++i++++Pw+Lp + +++++++ wyfF +++k+y++g+r+ r+tksg+Wk+tg + +++
  XP_009119656.1   5 VGLRFLPTDEELVDHYLRLKNHGGSntSPVDQVISTINICNFDPWELPrHsSMESKDQVWYFFGRKEKRYNRGERQIRKTKSGFWKKTGVTMDIK 99 
                     7*******************9998866778889**************95247888999************************************* PP

             NAM  94 sk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                     +k   ++e++g k++Lvf+    ++g+kt+W+mhey 
  XP_009119656.1 100 RKrsaHREKIGEKRVLVFH----SSGSKTNWIMHEYD 132
                     998878888**********....7999*********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.6983152IPR003441NAC domain
SuperFamilySSF1019411.96E-404152IPR003441NAC domain
PfamPF023657.9E-235132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MENMVGLRFL PTDEELVDHY LRLKNHGGSN TSPVDQVIST INICNFDPWE LPRHSSMESK  60
DQVWYFFGRK EKRYNRGERQ IRKTKSGFWK KTGVTMDIKR KRSAHREKIG EKRVLVFHSS  120
GSKTNWIMHE YDAACLSPTQ NMTYTICKVH KKGEAREISS PGSGIDALSL SLVTHMNNSG  180
GESSPAASEK PKNAHQLSGF SDKKQETELE EAIHGAFDNL SSYDWKYLLD DDEQSKTVAM  240
QKSLTGFLDW A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-25615220165NO APICAL MERISTEM PROTEIN
1ut4_B4e-25615220165NO APICAL MERISTEM PROTEIN
1ut7_A4e-25615220165NO APICAL MERISTEM PROTEIN
1ut7_B4e-25615220165NO APICAL MERISTEM PROTEIN
3swm_A4e-25615223168NAC domain-containing protein 19
3swm_B4e-25615223168NAC domain-containing protein 19
3swm_C4e-25615223168NAC domain-containing protein 19
3swm_D4e-25615223168NAC domain-containing protein 19
3swp_A4e-25615223168NAC domain-containing protein 19
3swp_B4e-25615223168NAC domain-containing protein 19
3swp_C4e-25615223168NAC domain-containing protein 19
3swp_D4e-25615223168NAC domain-containing protein 19
4dul_A4e-25615220165NAC domain-containing protein 19
4dul_B4e-25615220165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119656.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119656.10.0PREDICTED: NAC domain-containing protein 5-like
SwissprotO819141e-82NAC5_ARATH; NAC domain-containing protein 5
TrEMBLM4EWW40.0M4EWW4_BRARP; Uncharacterized protein
STRINGBra033299.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.14e-85NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]