PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119205.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 696aa    MW: 78694.6 Da    PI: 5.5409
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.54.1e-172378156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +r+ +++t +q+++Le++F+++++p +++r  L ++l+L+ +q+k+WFqN+R++ k
  XP_009119205.1 23 KRTYRRHTFQQTQRLEAYFKECPNPEESQRLSLGEELNLEPDQIKFWFQNKRTQNK 78
                    6888999**********************************************998 PP
2START106.64e-342224379206
                     HHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS
           START   9 elvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 
                     e++k+  ++e++Wv ss   +  + +e++ kf+ s         ++e +++++vv+ ++++l e +ld+  +W+  ++    ka+t+ ++ s   
  XP_009119205.1 222 EELKRLFVTEDLWVMSSidgTYVIDQESYEKFSHSIKhfrklsARVESSKDVTVVPIEATNLIEMFLDSE-KWKSLFPtivaKAMTIHKLGSElp 315
                     77888899*********988777788888888776668899999**************************.99999999999************* PP

                     .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
           START  89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                          + lq++  +l  lsplvp R+f++vR++++  +g w+++dvS    ++ +   ++  + ++pSg+li+  ++ hs+vtw+ehv+++ +  
  XP_009119205.1 316 inencNNLQVIWEKLHILSPLVPpREFMIVRCCQKIDEGIWIVADVSQRIVDSDQI--NSF-CYKRPSGCLIRAFPGAHSEVTWIEHVEVDHKPD 407
                     ***********************************************666666654..222.578*************************99877 PP

                     .HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 178 .hwllrslvksglaegaktwvatlqrqcek 206
                      hwl+r l+  g   gak+w+ tl+r ce+
  XP_009119205.1 408 aHWLYRELLCGGSGYGAKRWTTTLERMCER 437
                     8***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-17874IPR009057Homeodomain-like
SuperFamilySSF466893.21E-16879IPR009057Homeodomain-like
PROSITE profilePS5007116.0662080IPR001356Homeobox domain
SMARTSM003891.1E-122284IPR001356Homeobox domain
CDDcd000861.00E-132380No hitNo description
PfamPF000461.1E-142378IPR001356Homeobox domain
PROSITE profilePS5084829.921206440IPR002913START domain
SuperFamilySSF559616.32E-23208438No hitNo description
CDDcd088752.09E-81212436No hitNo description
Gene3DG3DSA:3.30.530.204.2E-6214401IPR023393START-like domain
SMARTSM002347.1E-17214437IPR002913START domain
PfamPF018529.3E-28221437IPR002913START domain
SuperFamilySSF559617.42E-11457658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MDHNDGGNSS SEHTSVNAKK REKRTYRRHT FQQTQRLEAY FKECPNPEES QRLSLGEELN  60
LEPDQIKFWF QNKRTQNKTQ IERNANILLR EENKKIKCEN EAMLEALRIV TCPDCGGPPL  120
GVERGHNFQN LSLVNTFLTE QRDEMANTVS MNQHQQNMVN LFASVQGQQI FDTHTSYGTI  180
PNSLMNDPSN SVGSSTSQDI QLQLISQMDI TQLSETATRA VEELKRLFVT EDLWVMSSID  240
GTYVIDQESY EKFSHSIKHF RKLSARVESS KDVTVVPIEA TNLIEMFLDS EKWKSLFPTI  300
VAKAMTIHKL GSELPINENC NNLQVIWEKL HILSPLVPPR EFMIVRCCQK IDEGIWIVAD  360
VSQRIVDSDQ INSFCYKRPS GCLIRAFPGA HSEVTWIEHV EVDHKPDAHW LYRELLCGGS  420
GYGAKRWTTT LERMCERMAL SSILTIPATD WSEATVEGRM SVMKLGERMV MNFNEMLTMS  480
GKVDFPQQSK CGVRISIRMN HDSGQPSGLV VSAASSFSVP ITPLQVFDSL LNNETRHQWD  540
VLCYRSAVSV TARILTGYNE NNYITILQPT QREDDVISMS QGPTRNMMML QECYMDALGG  600
MIVYAPLDMA SMSLATSGEV DPLKIPILSS GFTISNDGRR SMVAEEGGTI LTVVFQILVS  660
EDRRIRGLTE QSVDTVTSLI SSTVRNIKLL LNCPLE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the embryo at early stage and in the endosperm. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119205.10.0PREDICTED: homeobox-leucine zipper protein HDG8-like isoform X2
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLA0A398AU250.0A0A398AU25_BRACM; Uncharacterized protein
STRINGBra021363.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8