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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009119199.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 698aa MW: 78878.8 Da PI: 5.5409 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.5 | 4.1e-17 | 23 | 78 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +r+ +++t +q+++Le++F+++++p +++r L ++l+L+ +q+k+WFqN+R++ k XP_009119199.1 23 KRTYRRHTFQQTQRLEAYFKECPNPEESQRLSLGEELNLEPDQIKFWFQNKRTQNK 78 6888999**********************************************998 PP | |||||||
2 | START | 106.6 | 4e-34 | 222 | 437 | 9 | 206 |
HHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS START 9 elvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 e++k+ ++e++Wv ss + + +e++ kf+ s ++e +++++vv+ ++++l e +ld+ +W+ ++ ka+t+ ++ s XP_009119199.1 222 EELKRLFVTEDLWVMSSidgTYVIDQESYEKFSHSIKhfrklsARVESSKDVTVVPIEATNLIEMFLDSE-KWKSLFPtivaKAMTIHKLGSElp 315 77888899*********988777788888888776668899999**************************.99999999999************* PP .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 + lq++ +l lsplvp R+f++vR++++ +g w+++dvS ++ + ++ + ++pSg+li+ ++ hs+vtw+ehv+++ + XP_009119199.1 316 inencNNLQVIWEKLHILSPLVPpREFMIVRCCQKIDEGIWIVADVSQRIVDSDQI--NSF-CYKRPSGCLIRAFPGAHSEVTWIEHVEVDHKPD 407 ***********************************************666666654..222.578*************************99877 PP .HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 178 .hwllrslvksglaegaktwvatlqrqcek 206 hwl+r l+ g gak+w+ tl+r ce+ XP_009119199.1 408 aHWLYRELLCGGSGYGAKRWTTTLERMCER 437 8***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.25E-16 | 8 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-17 | 8 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.066 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-12 | 22 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.87E-14 | 23 | 80 | No hit | No description |
Pfam | PF00046 | 1.1E-14 | 23 | 78 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 29.921 | 206 | 440 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.32E-23 | 208 | 438 | No hit | No description |
CDD | cd08875 | 2.17E-81 | 212 | 436 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 4.3E-6 | 214 | 401 | IPR023393 | START-like domain |
SMART | SM00234 | 7.1E-17 | 214 | 437 | IPR002913 | START domain |
Pfam | PF01852 | 9.4E-28 | 221 | 437 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.97E-11 | 460 | 660 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MDHNDGGNSS SEHTSVNAKK REKRTYRRHT FQQTQRLEAY FKECPNPEES QRLSLGEELN 60 LEPDQIKFWF QNKRTQNKTQ IERNANILLR EENKKIKCEN EAMLEALRIV TCPDCGGPPL 120 GVERGHNFQN LSLVNTFLTE QRDEMANTVS MNQHQQNMVN LFASVQGQQI FDTHTSYGTI 180 PNSLMNDPSN SVGSSTSQDI QLQLISQMDI TQLSETATRA VEELKRLFVT EDLWVMSSID 240 GTYVIDQESY EKFSHSIKHF RKLSARVESS KDVTVVPIEA TNLIEMFLDS EKWKSLFPTI 300 VAKAMTIHKL GSELPINENC NNLQVIWEKL HILSPLVPPR EFMIVRCCQK IDEGIWIVAD 360 VSQRIVDSDQ INSFCYKRPS GCLIRAFPGA HSEVTWIEHV EVDHKPDAHW LYRELLCGGS 420 GYGAKRWTTT LERMCERMAL SSILTIPATD WSEAIATVEG RMSVMKLGER MVMNFNEMLT 480 MSGKVDFPQQ SKCGVRISIR MNHDSGQPSG LVVSAASSFS VPITPLQVFD SLLNNETRHQ 540 WDVLCYRSAV SVTARILTGY NENNYITILQ PTQREDDVIS MSQGPTRNMM MLQECYMDAL 600 GGMIVYAPLD MASMSLATSG EVDPLKIPIL SSGFTISNDG RRSMVAEEGG TILTVVFQIL 660 VSEDRRIRGL TEQSVDTVTS LISSTVRNIK LLLNCPLE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the embryo at early stage and in the endosperm. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009119199.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009119199.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG8-like isoform X1 | ||||
Swissprot | Q9M9P4 | 0.0 | HDG8_ARATH; Homeobox-leucine zipper protein HDG8 | ||||
TrEMBL | A0A398AU25 | 0.0 | A0A398AU25_BRACM; Uncharacterized protein | ||||
STRING | Bra021363.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12791 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03260.1 | 0.0 | homeodomain GLABROUS 8 |