PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119114.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 360aa    MW: 38857.3 Da    PI: 7.5918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-10293338655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  XP_009119114.1 293 SIAERERRTRISGRLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 338
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.814287337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14290354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-11291342No hitNo description
Gene3DG3DSA:4.10.280.103.2E-13292352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12293343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-8293338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MYQSSSSTSS SSQRSSLPGG GGGGAGLIRY GSAPGSLLNS MVDEVIGGSN ARDFNYPPPD  60
NFLGDFFAGA DSSSLRSESM TCGVNSSDGQ KHLGSNNNNN NNNKDLLLDR SYGGFNEISQ  120
HKINNHVGGG SSSGSYSLAR QRSSPADFFS YLSGEKNSFS LNQPTSDYNQ QGGSNAGRGP  180
SRLKSQLSFT SHDPLSRISE VNETSVHDGS GHSFSAASFG AATDSWDDGS GSIGFTVTRP  240
TKRPKDMNSG LFSQYSLPSD TSMNYMDNYM QLPEDSVPCK VRAKRGFATH PRSIAERERR  300
TRISGRLKKL QDLVPNMDKQ TSYSDMLDLA VQHIKGLQHQ LQTLKKEQEN CTCECSERPS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.165500.0bud| flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119114.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3175490.0KF317549.1 Brassica oleracea var. capitata PA1 (PA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119114.10.0PREDICTED: transcription factor bHLH128
SwissprotQ8H1020.0BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A397XIC00.0A0A397XIC0_BRACM; Uncharacterized protein
TrEMBLM4DG330.0M4DG33_BRARP; Uncharacterized protein
STRINGBra015456.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-173bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]