PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119085.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 427aa    MW: 47838.7 Da    PI: 5.585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119085.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.5e-10220261854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      Er RR + +++f  L+ l+P++     +K++ a+i+ +A+++Ik+L
  XP_009119085.1 220 TERERRVHFKDRFGDLKNLIPNP-----TKNDRASIVGEAIDHIKEL 261
                     6**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.26E-9210266No hitNo description
Gene3DG3DSA:4.10.280.101.3E-9211272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.96E-12211278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.624212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-6218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-7220261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEGGNMFEEI GCFDPNAPAD MTVESNFSPA EPPPPVLVAG STSNSNCSLE DLSEFHLSPQ  60
DCSLAAATAS VHQLHINATT PSCDQQLQSL MNQNFQDPPY APQSNNWDNG YQDFVTLGPN  120
HTTPDLLSLL QLPRSSLPPF ATPSLHDMIM TSSSAASAAF DPLYHLNFPM QPPSGTLLGV  180
EDQTEFNGVN SLIYAEENNN TENGLNRKGR GSRKRKVFPT ERERRVHFKD RFGDLKNLIP  240
NPTKNDRASI VGEAIDHIKE LLRTIEEFKM LLEKKRITRQ RNKRGRIEIG EEDVGDENYN  300
AQSEVVEQCL VNKKNSSLRC SWLKRKSKFT EVDVRIIDDE VTIKIVQKKK INCLLFVSKV  360
IDQLQLDLHH VAGAQIGEHH SFLFNTKICE GSSVYASAIA DRVMEVLEKH YMEALSSNNG  420
YHCYTSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278283RQRNKR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119085.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119085.10.0PREDICTED: transcription factor bHLH89
SwissprotQ9LND00.0BH089_ARATH; Transcription factor bHLH89
TrEMBLM4DG570.0M4DG57_BRARP; Uncharacterized protein
STRINGBra015480.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.20.0bHLH family protein
Publications ? help Back to Top
  1. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]