PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 252aa MW: 28742.9 Da PI: 5.3737

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009119084.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++G ++W++ ++ g+ R++k+c++rw +yl XP_009119084.1 14 KGPWSAEEDRILISHIRLHGHPNWRALPQLAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.1	7.4e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l XP_009119084.1 67 RGNFTPQEEETIINLHQSLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.221	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.75E-29	10	108	IPR009057	Homeodomain-like
SMART	SM00717	3.9E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.31E-9	16	61	No hit	No description
PROSITE profile	PS51294	24.903	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	3.1E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.78E-9	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MGRRPCCEKM GLKKGPWSAE EDRILISHIR LHGHPNWRAL PQLAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TPQEEETIIN LHQSLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRIQHNQ 120 DQNISETICD NDEQLVSVMD EKRPSSPQQQ SSSSTNISAV TTSSNNNDVS NNSSKDSATS 180 LEDVLPFIDE SFWSEVVSMD CNLSGDENRE IKMEDWESSL DSNIKGYNHD MESWFDNLLT 240 SNLTTGENSD IF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-25	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.22463	0.0	root\| silique

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and flowers. Expressed in shoot apex, axillary buds, at the basis of flowers and branching points of inflorescences. {ECO:0000269\|PubMed:9681014}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269\|PubMed:16861809, ECO:0000269\|PubMed:9681014}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00127	DAP	Transfer from AT1G06180	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009119084.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269\|PubMed:9681014}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF738279	0.0	KF738279.1 Brassica napus MYB transcription factor 13 (MYB13.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009119084.1	0.0	PREDICTED: myb-related protein Myb4
Swissprot	Q9LNC9	1e-129	MYB13_ARATH; Transcription factor MYB13
TrEMBL	M4DG58	0.0	M4DG58_BRARP; Uncharacterized protein
STRING	Bra015481.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	1e-114	myb domain protein 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156]