PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118610.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 719aa    MW: 79343.6 Da    PI: 5.5226
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118610.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1967123157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  XP_009118610.1  67 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 123
                     688999************************************************995 PP
2START215.61.7e-672534662206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                     la +a++el+++++++ep+W +++   +++e+ ++f+++ +     +++ea+r+s+vv+m++ + ve+l+d++ qW+  +a    +a+tl+v+s+
  XP_009118610.1 253 LAVAAMEELIRMVQVDEPLWNSLV--FDEEEYARTFPRGIGpkpagFRSEASRESVVVIMNHINIVEILMDVN-QWSMVFAgmvsRAMTLAVLST 344
                     6789********************..************999********************************.********************* PP

                     T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
           START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                     g      galq+m+ae+q+++plvp R+ +f+Ry++q+ +g+w++vd+S+ds q++p     vR++++ Sg+li++++ng+sk+twvehv++++r
  XP_009118610.1 345 GvagnynGALQVMTAEFQVPTPLVPtRETYFARYCKQQADGSWAVVDISLDSLQPNPP----VRCRRRASGCLIQEMPNGYSKLTWVEHVEVDDR 435
                     *********************************************************8....********************************* PP

                     XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                      +h l++++v++g+a+gak+wva l+rqce+
  XP_009118610.1 436 GVHDLYKHMVSTGHAFGAKRWVAILDRQCER 466
                     *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-2145122IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1955124IPR009057Homeodomain-like
PROSITE profilePS5007116.47164124IPR001356Homeobox domain
SMARTSM003891.6E-1865128IPR001356Homeobox domain
CDDcd000867.92E-1967125No hitNo description
PfamPF000463.2E-1767122IPR001356Homeobox domain
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PROSITE profilePS5084841.658243469IPR002913START domain
SuperFamilySSF559618.24E-33244468No hitNo description
CDDcd088751.04E-120247465No hitNo description
SMARTSM002343.0E-61252466IPR002913START domain
PfamPF018528.7E-60253466IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-4345432IPR023393START-like domain
SuperFamilySSF559615.5E-25485711No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MFEPNMLLAA MNNEDSNNHN YNHEVNNNNN EGFLRDDEFD SANTKSGSEN QEGGSGNDQD  60
PLHPNKKKRY HRHTQLQIQE MEAFFKECPH PDDKQRKQLS RELGLEPLQV KFWFQNKRTQ  120
MKNHHERHEN SHLRAENEKL RGDNLRYREA LANASCPNCG GPTAIGEMSF DEHQLRLENA  180
RLREEIDRIS AIAAKYVGKP VSNYPLMSPP PLPPRPLELA MGNFGDVYGN NPTDQFKCIT  240
APTESDKPVI IDLAVAAMEE LIRMVQVDEP LWNSLVFDEE EYARTFPRGI GPKPAGFRSE  300
ASRESVVVIM NHINIVEILM DVNQWSMVFA GMVSRAMTLA VLSTGVAGNY NGALQVMTAE  360
FQVPTPLVPT RETYFARYCK QQADGSWAVV DISLDSLQPN PPVRCRRRAS GCLIQEMPNG  420
YSKLTWVEHV EVDDRGVHDL YKHMVSTGHA FGAKRWVAIL DRQCERLASV MATNISSGEV  480
GVITNQEGRR SMLKLAERMV ISFCAGVSAS TAHTWTTLSG TGAEDVRVMT RKSVDDPGRP  540
PGIVLSAATS FGIPVPPKRV FDFLRDENSR NEWDILSNGG VVQEMAHIAN GRETGNCVSL  600
LRVNSANSSQ SNMLILQESC TDPTASFVIY APVDIVAMNI VLNGGDPDYV ALLPSGFAIL  660
PDGNANGGGE GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN NLIACTVERI KASMSCETA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118607.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_009118608.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_009118609.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_009118610.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_009118611.10.0PREDICTED: homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLM4EUJ60.0M4EUJ6_BRARP; Uncharacterized protein
STRINGBra032478.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2