PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118474.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 324aa    MW: 35841.7 Da    PI: 5.8346
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118474.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.6e-10132181554
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l   + 
  XP_009118474.1 132 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLFQR 181
                     9****************************************998876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-16128192IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.909130193IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.83E-10132183No hitNo description
PfamPF001703.5E-8132180IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.5E-10132187No hitNo description
CDDcd147031.17E-21133182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEKSDPQPPN AADPIPSSFH RRSRSDDMSM FMFMDPLSSS GPPPSSDDLP SDDDLFSSFI  60
DVDSLSSNPH PTAIAFPNHA AANSVPSSSS RPRHRHSNSV DAGCAMYANE IMDAKKAMPP  120
EKLSELWNVD PKRAKRILAN RQSAARSKER KARYIQELER KVQSLQTEAT TLSAQLTLFQ  180
RDTNGLANEN TELKLRLQAM EQQAHLRNAL NEALRKELER MKIETGEISG NSDSFDMGMQ  240
QVQYSPSTYM AIPPYHHGSI NNGQDMQQMH GYNPMEAMSN SQSVSEFLQN GRLQGLEISS  300
NNNSSSLVKS EGPSLSASES SSAY
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}.
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118474.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118474.10.0PREDICTED: transcription factor RF2b
SwissprotO228731e-83BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A3P5Y9R30.0A0A3P5Y9R3_BRACM; Uncharacterized protein
TrEMBLM4ERW40.0M4ERW4_BRARP; Uncharacterized protein
STRINGBra031541.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135551727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.11e-122basic leucine-zipper 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]