PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118239.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 386aa    MW: 44287.7 Da    PI: 5.1926
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-10208250754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er+RR+riN+++  Lr l+P       +K++K  +   Av+YI++L
  XP_009118239.1 208 HSERKRRERINQRIYALRALVPVI-----TKMNKNGTISDAVDYINEL 250
                     57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-189157IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.26E-11199255No hitNo description
SuperFamilySSF474598.64E-15200263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.811201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-8208250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12208264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MMRGVERVKE VLRPLVDSRD WDFCVIWKLG DDPSRFIEWV GCCCSGSSYT EKNIKHEDVE  60
EEEEERQKMS SICRDEHNKH HIRSLACEAL SRFPLFIPLY PGIHGEVVIS KSPKWLVNSS  120
PGSKQDIFRT RVLVPVRDGL VELFSFTMKP VDESMVDLII SRCNAFFEPF PEQTLPCGEQ  180
APCLMNNKEE DVVMQDMTKE NFKSKNLHSE RKRRERINQR IYALRALVPV ITKMNKNGTI  240
SDAVDYINEL LVEKQKLEDE LSGINEVECR AEEEAVIANP EAEKVSSKLN KNVNNEVNLE  300
VHETGEGDFL IRVTQEHKRD GFKRLIEAVE SCGLEIINVS FTRLDLTVMT ILNVKADKDG  360
ITREDLRDLL FRMIITSVAG SVKHCT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214ERKRRE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118239.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118239.10.0PREDICTED: transcription factor bHLH90-like
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLM4ESE50.0M4ESE5_BRARP; Uncharacterized protein
STRINGBra031723.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.11e-180bHLH family protein