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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009117582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 519aa MW: 57423.1 Da PI: 6.4151 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.2 | 9.5e-30 | 238 | 297 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+ XP_009117582.1 238 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCSEDMSILISTYEGTHNHP 297 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-31 | 223 | 299 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-27 | 231 | 299 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.334 | 233 | 299 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-35 | 238 | 298 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-26 | 239 | 297 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MENEDFLRST VHGREDRHEE TRKYVSSHDG SHQEQDHIIR SKLNSIRVEM EEAKEENRRL 60 KSSLSRTRKD FEILQTQYNQ LMVKHEDWTN KFSPKGHHQD KEDEDKENIR EREELVLLSL 120 GRRSKSPVPS GSMTNQDEKG KGLMDETGDG KNIDEHDEGL SMGFEYKDLS NPSEKLEIDH 180 SQEKTSLEVN SSNKIPSENS FGFKNDGDDH EDEEELLPQN LVKKTRVSVR SRCETPTMND 240 GCQWRKYGQK IAKGNPCPRA YYRCTIAPSC PVRKQVQRCS EDMSILISTY EGTHNHPLPA 300 SATPMASATS AAASMLISGA SSSGAADLHG LNFSLSGNSI TPKPKSPFLQ TSSSPSSSGH 360 PTVTLDLTAS SSSQQTFLSM LNRFSASPSN VPRSNSYPST NLNFSNNTNT LMNWGGDSGS 420 GNRNEQYRAA FGNVGTPQQS PYRYMIQTRT TGSSFDPFGR SSSSSTNPTH QMQSLPAETI 480 KAITTDPSFQ SALATALSSI IGGDLKMDNV TKDEAGKSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-21 | 225 | 299 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009117582.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430068 | 0.0 | KF430068.1 Brassica rapa WRKY transcription factor 61 (WRKY61) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009117582.1 | 0.0 | PREDICTED: probable WRKY transcription factor 61 | ||||
Swissprot | Q8VWV6 | 0.0 | WRK61_ARATH; Probable WRKY transcription factor 61 | ||||
TrEMBL | A0A078GAF5 | 0.0 | A0A078GAF5_BRANA; BnaA09g44440D protein | ||||
TrEMBL | A0A3P5YSN3 | 0.0 | A0A3P5YSN3_BRACM; Uncharacterized protein | ||||
STRING | Bra031053.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12663 | 17 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 0.0 | WRKY DNA-binding protein 61 |
Publications ? help Back to Top | |||
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