PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009117483.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 413aa MW: 45176.8 Da PI: 7.0185 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.3 | 3.5e-28 | 145 | 199 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G ekA+P++ilelm+v++Lt+++v+SHLQkYR++ XP_009117483.1 145 KRKVDWTPELHRRFVDAVEQL-GLEKAVPSRILELMGVHCLTRHNVASHLQKYRSH 199 5799*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.722 | 142 | 201 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-27 | 143 | 202 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-26 | 145 | 199 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.04E-17 | 145 | 202 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-7 | 148 | 197 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MLALSPARNS ARGGCFDGES EFLATSCDFT INPEENFPVF ADHGDLLDII DFDDLFGVAG 60 DVLPDLEIDP EILAGDFSAS SSSEKTDSQG ETNKKGISGE VVSKRDEDER AMSEKMVNYV 120 DGDSNRKRKY SSSSGSSKNN SNEGKRKVDW TPELHRRFVD AVEQLGLEKA VPSRILELMG 180 VHCLTRHNVA SHLQKYRSHR KHLLAREAEA ANWTRKRHIY GLDSTGVNIN GRNKNGWIAP 240 APTIGYAPPP PAAVASPAIH HHHFRPLHVW GHPTVNQSVI PHVFPKHLPP PSSAMATPPF 300 WVSDTPYWPR VQNGPAPYFP TVATRFRAPP VAGFPQAMPP HHTVSKPDHG YGGSRSLVDL 360 HPSKESVDAA IGDVLTRPWL PLPLGLKPPA VDGVMTELHR HGVSEVPPTA PCA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 5e-16 | 150 | 201 | 6 | 57 | Transcription factor LUX |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.17136 | 0.0 | leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette and cauline leaves. Expressed at low levels in cotyledons and shoots. {ECO:0000269|PubMed:12220263}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009117483.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352526 | 0.0 | AK352526.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-C06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009117483.1 | 0.0 | PREDICTED: transcription activator GLK1-like isoform X4 | ||||
Swissprot | Q9SIV3 | 0.0 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | M4EQQ6 | 0.0 | M4EQQ6_BRARP; Uncharacterized protein | ||||
STRING | Bra031129.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 1e-173 | GBF's pro-rich region-interacting factor 1 |