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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009117429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 376aa MW: 41956.9 Da PI: 9.8675 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.5 | 3.2e-09 | 247 | 303 | 5 | 61 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr +r+ NR +A rs +R ++i++Le kv++L+ e ++L l l+ l++ XP_009117429.1 247 KRVKRMLANRASAARSKERETQYIAKLEHKVQTLQIETTTLSAHLTYLQRDNMGLQN 303 999***************************************999888777666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.7E-13 | 243 | 307 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.174 | 245 | 308 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 9.1E-9 | 245 | 305 | No hit | No description |
SuperFamily | SSF57959 | 5.22E-10 | 247 | 303 | No hit | No description |
Pfam | PF00170 | 6.3E-8 | 247 | 305 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 9.37E-19 | 248 | 299 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MQRPNSSSSS SLNPSPIRFP VPFTGNRVGT PPPPPIPPTF QPKHSFPAAA VEDRTGAVFS 60 PSLPPSPFTM YHSPSRVVAG GSGNLPPRNS HRRSNSDHTF VFSSMSPPLI PSKSLERSVS 120 SCGEASDWSK LVKEEERRTF SEGYDDALRA YMRLDKLDAE RSRGRTRKMT NGGSTSGDSE 180 GESNVKRRAG GDIAPTSGHY RSVSLDSCCF REDDYSVRFG KYEFSAGDMK KIAADETLAG 240 IVMADPKRVK RMLANRASAA RSKERETQYI AKLEHKVQTL QIETTTLSAH LTYLQRDNMG 300 LQNQNNELKF RLQSMEQQTQ LRNALSEKLT EEFQRLSLVI GVPNRSESNI SNASLTPEMF 360 QQQLRISQLQ HQHYNE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009117429.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189480 | 0.0 | AC189480.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082F21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009117429.1 | 0.0 | PREDICTED: probable transcription factor PosF21 | ||||
TrEMBL | M4EQU9 | 0.0 | M4EQU9_BRARP; Uncharacterized protein | ||||
STRING | Bra031172.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20354 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21230.1 | 1e-113 | bZIP family protein |