PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117427.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 387aa    MW: 43384.8 Da    PI: 9.409
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117427.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.72.2e-07258298545
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                     k ++r  +NR AArrs qR  + i +Leek ++Le+e  +L
  XP_009117427.1 258 KYAKRTLSNRAAARRSVQRSAQHILNLEEKEQTLEKEGATL 298
                     779**********************************8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-6254318IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-5256299No hitNo description
SuperFamilySSF579593.69E-5258309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDRQAKNVPF QTSFVLSTHC PCPPSGQNRG SMPPPRRSSL PPLPPKRPTT ARRHQQVGLQ  60
NFTGPRLLPP QSPVFRSWTP MSSPAPSSSF QYFQPAPPVA YHNAALPPRP PTTSVSARGS  120
AYSGNDSAVF PSMDAMRMIY PGPIEMPVGV NYSKEGHGEP AGFVDEQVYM DLDEIFDFST  180
KDDDVARIGS GSSENNAGVK KRAAPSRKTR RKSVSPSVDC NNNWKSSVAI EKGMFTESQM  240
NEIARCKILQ KYVVTDPKYA KRTLSNRAAA RRSVQRSAQH ILNLEEKEQT LEKEGATLTV  300
HTRFAEKTKL GLEEENMKLR IRYQGLQDQF KRANASKECN NEEINWVKQK GKEAVFPDWG  360
DTTMDEFLLE QLNELNEEPK TNNYGFE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270276RRSVQRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117427.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894800.0AC189480.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082F21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117427.10.0PREDICTED: uncharacterized protein LOC103842546 isoform X2
TrEMBLM4EQV00.0M4EQV0_BRARP; Uncharacterized protein
STRINGBra031173.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-16bZIP family protein