PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117336.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 323aa    MW: 36122.3 Da    PI: 8.6868
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-13147194355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A+++Ik+Lq
  XP_009117336.1 147 QEHILAERKRREKLTQRFVALSALIPGL-----KKMDKASVLGDAIKHIKYLQ 194
                     56999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.656144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10147194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16148208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-17148205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.21E-13149198No hitNo description
SMARTSM003536.1E-15150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MATTMNVWST KWTSGLDIEE YNIIHQHHMN SLLGDFPQSL SSLHDTSTCY NFGASCNDYL  60
VEEEPSKILK TTHESPNLHL YPFANSTSPH PQPSSRFLSF EKTGLKVMNH KSPNLIFSPK  120
EKVGSEDLIR RGTKKAQPLA RSPSNAQEHI LAERKRREKL TQRFVALSAL IPGLKKMDKA  180
SVLGDAIKHI KYLQESVSEY EKQKKGRTLE SVVLVNKSQL VLDEHHKLSP SFSDGNRDYS  240
SSNLPEIEVR VSGKDVLIKI ICEKQKGNLI KIMGEIEKLG LSITNSSLLP FGPTSDISII  300
AQKTCDFDMK VEDVVKSLSC GLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-12149214976Transcription factor MYC2
5gnj_B2e-12149214976Transcription factor MYC2
5gnj_E2e-12149214976Transcription factor MYC2
5gnj_F2e-12149214976Transcription factor MYC2
5gnj_G2e-12149214976Transcription factor MYC2
5gnj_I2e-12149214976Transcription factor MYC2
5gnj_M2e-12149214976Transcription factor MYC2
5gnj_N2e-12149214976Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157ERKRRE
2153158RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117336.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117336.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ1PF171e-142BH018_ARATH; Transcription factor bHLH18
TrEMBLM4FFQ00.0M4FFQ0_BRARP; Uncharacterized protein
STRINGBra039924.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-144bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]