PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117141.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 338aa    MW: 35647 Da    PI: 6.962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117141.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.8e-11158203555
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  XP_009117141.1 158 HSIAERLRRERIAERMKGLQELVPNgN------KTDKASMLDEIIDYVKFLQ 203
                     99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-16151212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.55E-13151207No hitNo description
PROSITE profilePS5088816.984153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15155212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8158203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMNSSLLTPS SSSHVQTPAT TFDHEDFLDQ IFASSPWPSD EAHPPPPPPP PSSDGFVDSR  60
HQQIMMMPLP SHHRNEVVDG SSVHSLYNGF SACGSLPFHI PQGSAGGMMN QQGQALTQTQ  120
AQKQPQVSAS IATGGTAAAP PQSRTKVRAR RGQATDPHSI AERLRRERIA ERMKGLQELV  180
PNGNKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGGASI PSQISEENAS SAVAGGNQAT  240
GNSNDSLTMT EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTATC HSRAAGSVGG  300
HPSSPNLSGM TVQSTNKVRL SGNGVTEGSS PLAVKEAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117141.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1763701e-127AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21.
GenBankBT0265121e-127BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117141.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG91e-162BH066_ARATH; Transcription factor bHLH66
TrEMBLM4CUG80.0M4CUG8_BRARP; Uncharacterized protein
STRINGBra007863.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-139LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]