PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117137.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 324aa    MW: 36507.8 Da    PI: 10.1553
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.59.6e-1565150186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ + +Li+a  +++ +l+rg+lk+++Weev++ +       ++  ++ +qCk++++ ++k+yk++k ++++     ss++++fd+l+
  XP_009117137.1  65 CWSERGTGVLIDAWGKIHLELSRGNLKQKHWEEVAETVrrkaeDNGKTPKTDVQCKNRMDTVKKKYKQEKLTRGR-----SSSWVFFDKLD 150
                     7*************************************888877788999********************99998.....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2263152No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MADDDDDQIR SHSDSPDPSS SSPPPPGKFT VTVASPAPPR QKDPDASPLA LLPIKSSGGG  60
GREDCWSERG TGVLIDAWGK IHLELSRGNL KQKHWEEVAE TVRRKAEDNG KTPKTDVQCK  120
NRMDTVKKKY KQEKLTRGRS SSWVFFDKLD RLIGSTAKIS SPPPPRGLLK IPMGKSWNLY  180
HRQGEAETPR FGDKARVKAA SKSWFDSDSE SEATMSEDSG DRLPPPPLSK RKQGGGNTWR  240
EVSSAIMRFG EAYEQIENAK LRQVAEMEKE RLRFFKEVEM QRMQFFVKIQ FELSQLKQQX  300
GRRMGNNSNN MNAIVNNSNN DVRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.158441e-127flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117137.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018510472.10.0PREDICTED: trihelix transcription factor ASIL2 isoform X2
SwissprotQ9LJG87e-66ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLM4DYE00.0M4DYE0_BRARP; Uncharacterized protein
STRINGBra021536.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-67sequence-specific DNA binding transcription factors