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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009116883.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 351aa MW: 39062.1 Da PI: 4.97 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.9 | 0.00021 | 174 | 224 | 5 | 55 |
HHHHHHHHH.....HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRR.....driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n+ +rRR ++iN+++ +L++llP++ +K + + L +A++Y+ Lq XP_009116883.1 174 SNILVKRRRkqketNDINKKMRNLQDLLPNS-----QKEDNEALLDEAINYMTTLQ 224 5566666662222257**************9.....799999**********9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-8 | 172 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.40E-5 | 172 | 228 | No hit | No description |
PROSITE profile | PS50888 | 10.036 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-9 | 174 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MTSPSSSSSS TFKPKLTDQE YMELVFENGQ ILAKSQRSNG FSMHNQRTKS IVDLYEAEYN 60 EDFKKTIHGA DTSDKNLVDT QVVPEPLVVA AYETNMLMNQ LNLIQSLKAS SSKRMVVDYE 120 NRKDIVPPDE QSVVAERSVE LGYDSTDFTE DSEESTYQSS SLDDVRPQVP ARTSNILVKR 180 RRKQKETNDI NKKMRNLQDL LPNSQKEDNE ALLDEAINYM TTLQHQVQMM TMGKRFVTPA 240 TMLPLGPQYS QMGLATGMQM GVPQLLPAPV LGAGLPLVNT QADVLRVLNH PVLMPIQNSA 300 PFTPMQNYLP QYVPPACAAF PNLIPNSTTS SNLDDARTHG GNLSGKESDK P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 184 | VKRRRKQK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.24337 | 1e-45 | root| silique |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009116883.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC172877 | 0.0 | AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009116883.1 | 0.0 | PREDICTED: transcription factor PIF6 isoform X2 | ||||
Swissprot | Q8L5W7 | 1e-147 | PIF6_ARATH; Transcription factor PIF6 | ||||
TrEMBL | M4CTW6 | 0.0 | M4CTW6_BRARP; Uncharacterized protein | ||||
STRING | Bra007660.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62090.2 | 1e-138 | phytochrome interacting factor 3-like 2 |