PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116830.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 283aa    MW: 32062.4 Da    PI: 4.5013
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1894144256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g++ AeIrdps+   r r++lg+f taeeAa  +++a+ +++g+
  XP_009116830.1  94 KYRGVRRRP-WGKFSAEIRDPSS---RSRVWLGTFETAEEAAMVYDRAAINFRGH 144
                     8********.**********965...4*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-2194151IPR016177DNA-binding domain
PROSITE profilePS5103222.5594151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2994150IPR001471AP2/ERF domain
SMARTSM003801.5E-3594157IPR001471AP2/ERF domain
CDDcd000181.79E-3094150No hitNo description
PfamPF008478.5E-1294144IPR001471AP2/ERF domain
PRINTSPR003671.3E-1095106IPR001471AP2/ERF domain
PRINTSPR003671.3E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MERRTRRVKF TEHHKVTPVP TKPSNDSPRV VRIAYTDPFA TDSSSDDEDH NVTVAPRVKR  60
YVEEIRFGET KSSSSSSRKA RKGGNDDVSA NPVKYRGVRR RPWGKFSAEI RDPSSRSRVW  120
LGTFETAEEA AMVYDRAAIN FRGHNAQTNF LTPPPPPPSS PVIDLETVSG CDSGSQSLRS  180
PTSVLRFNFN EKTEVEIEPI ELATEVEAAS LFPDPYSLPE LCLAGEYFWD SETPPEPLFL  240
DDEMEIRKPL VNPVIPKEEN EPEDFSFDLS EDSWDVDNFF END
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2095150662ATERF1
3gcc_A2e-2095150662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116830.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893580.0AC189358.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB044E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116830.10.0PREDICTED: ethylene-responsive transcription factor CRF6
SwissprotQ9M3741e-103CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A397Y7H10.0A0A397Y7H1_BRACM; Uncharacterized protein
STRINGBo8g096140.11e-173(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.12e-96cytokinin response factor 6