PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116736.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 321aa    MW: 36189.8 Da    PI: 8.2827
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000182850123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC+ C ksF +   L  H+r+H
  XP_009116736.1 28 YKCKFCFKSFVNGRALGGHMRSH 50
                    9*********************9 PP
2zf-C2H215.93.7e-05211233123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ Cgk+F++   L  H  +H
  XP_009116736.1 211 YTCETCGKVFKSYQALGGHRASH 233
                     9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.88E-102750No hitNo description
PfamPF139124.7E-62851IPR007087Zinc finger, C2H2
SMARTSM003550.0162850IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1382850IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
SuperFamilySSF576678.88E-10206233No hitNo description
PfamPF139124.9E-11211235IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.24211238IPR007087Zinc finger, C2H2
SMARTSM003550.011211233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
PfamPF139125.6E-12259281IPR007087Zinc finger, C2H2
SMARTSM003550.23259281IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058259281IPR007087Zinc finger, C2H2
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MLVDSTSLYF FFLLFLLLLS LLSKMESYKC KFCFKSFVNG RALGGHMRSH MPTLHKFSIQ  60
EEEERPSQLG DESKSDVSSS EEGQASGLRE EKHPTTDDDD GSETESSRNI VNLRRKRSKR  120
TRKLDSFSSK KMKTSQLGYK NEPEAEAEPP QSSASDTTTE EDLAFCLMML SRDKWKKNKT  180
SSSKEVLEEI ETEASEGYKI NRATTTTKGR YTCETCGKVF KSYQALGGHR ASHKKNRVTN  240
KTEQTEYGNV VVAPEKRIHE CPICLRVFAS GQALGGHKRS HGIGNFSVNH QVRGTVSVKE  300
KMIDLNLPAP TEEEEVSMVF Q
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116736.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893190.0AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116736.10.0PREDICTED: zinc finger protein ZAT9-like
SwissprotQ9M2021e-134ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A397Y4B00.0A0A397Y4B0_BRACM; Uncharacterized protein
STRINGBra007545.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-111C2H2-like zinc finger protein